Hb_004306_050

Information

Type -
Description -
Location Contig4306: 28384-28677
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_899105
description hypothetical protein
nr
ID CBI29414.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7L5U6
description Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899105 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_050 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000487_330 0.1277227628 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Populus euphratica]
3 Hb_033594_130 0.1862759394 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
4 Hb_000270_320 0.1962096239 - - hypothetical protein RCOM_1512920 [Ricinus communis]
5 Hb_001842_070 0.1964535299 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
6 Hb_006472_010 0.2104961459 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
7 Hb_020247_040 0.2126071466 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
8 Hb_000099_200 0.2150790396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_024973_010 0.2164925241 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
10 Hb_000297_050 0.2166587978 - - hypothetical protein JCGZ_08840 [Jatropha curcas]
11 Hb_103873_010 0.2172997185 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
12 Hb_001141_280 0.2175050539 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
13 Hb_002248_050 0.2177443307 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
14 Hb_000122_130 0.2185088372 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000329_600 0.2189815592 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
16 Hb_002374_460 0.2194109036 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001258_080 0.219563056 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
18 Hb_001999_060 0.2202860291 - - hypothetical protein POPTR_0009s05000g [Populus trichocarpa]
19 Hb_007760_030 0.2207379447 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
20 Hb_008085_030 0.2223830683 - - PREDICTED: uncharacterized protein LOC105639414 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_050 Hb_004306_050 Hb_000487_330 Hb_000487_330 Hb_004306_050--Hb_000487_330 Hb_033594_130 Hb_033594_130 Hb_004306_050--Hb_033594_130 Hb_000270_320 Hb_000270_320 Hb_004306_050--Hb_000270_320 Hb_001842_070 Hb_001842_070 Hb_004306_050--Hb_001842_070 Hb_006472_010 Hb_006472_010 Hb_004306_050--Hb_006472_010 Hb_020247_040 Hb_020247_040 Hb_004306_050--Hb_020247_040 Hb_029223_030 Hb_029223_030 Hb_000487_330--Hb_029223_030 Hb_000487_330--Hb_001842_070 Hb_002248_050 Hb_002248_050 Hb_000487_330--Hb_002248_050 Hb_000012_450 Hb_000012_450 Hb_000487_330--Hb_000012_450 Hb_000300_010 Hb_000300_010 Hb_000487_330--Hb_000300_010 Hb_033594_130--Hb_001842_070 Hb_029510_140 Hb_029510_140 Hb_033594_130--Hb_029510_140 Hb_006130_010 Hb_006130_010 Hb_033594_130--Hb_006130_010 Hb_063134_010 Hb_063134_010 Hb_033594_130--Hb_063134_010 Hb_033594_130--Hb_006472_010 Hb_001855_010 Hb_001855_010 Hb_033594_130--Hb_001855_010 Hb_001488_100 Hb_001488_100 Hb_000270_320--Hb_001488_100 Hb_000340_430 Hb_000340_430 Hb_000270_320--Hb_000340_430 Hb_000329_600 Hb_000329_600 Hb_000270_320--Hb_000329_600 Hb_001999_060 Hb_001999_060 Hb_000270_320--Hb_001999_060 Hb_002301_320 Hb_002301_320 Hb_000270_320--Hb_002301_320 Hb_011909_040 Hb_011909_040 Hb_000270_320--Hb_011909_040 Hb_007760_030 Hb_007760_030 Hb_001842_070--Hb_007760_030 Hb_011224_080 Hb_011224_080 Hb_001842_070--Hb_011224_080 Hb_000317_430 Hb_000317_430 Hb_001842_070--Hb_000317_430 Hb_000365_360 Hb_000365_360 Hb_001842_070--Hb_000365_360 Hb_001842_070--Hb_063134_010 Hb_006693_030 Hb_006693_030 Hb_001842_070--Hb_006693_030 Hb_009048_040 Hb_009048_040 Hb_006472_010--Hb_009048_040 Hb_000080_190 Hb_000080_190 Hb_006472_010--Hb_000080_190 Hb_007632_220 Hb_007632_220 Hb_006472_010--Hb_007632_220 Hb_085781_010 Hb_085781_010 Hb_006472_010--Hb_085781_010 Hb_005754_060 Hb_005754_060 Hb_006472_010--Hb_005754_060 Hb_004109_190 Hb_004109_190 Hb_006472_010--Hb_004109_190 Hb_000221_220 Hb_000221_220 Hb_020247_040--Hb_000221_220 Hb_000531_020 Hb_000531_020 Hb_020247_040--Hb_000531_020 Hb_000883_050 Hb_000883_050 Hb_020247_040--Hb_000883_050 Hb_003050_080 Hb_003050_080 Hb_020247_040--Hb_003050_080 Hb_000479_010 Hb_000479_010 Hb_020247_040--Hb_000479_010 Hb_007101_130 Hb_007101_130 Hb_020247_040--Hb_007101_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.39386 0 0.589117 0 1.80067 4.36466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18228 3.72701 3.93222 1.01118 0.947694

CAGE analysis