Hb_020247_040

Information

Type -
Description -
Location Contig20247: 54706-61067
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20310g
description POPTRDRAFT_822434; hypothetical protein
nr
ID XP_012088254.1
description PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20549: 54830-57332 , PASA_asmbl_20550: 58827-61106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020247_040 0.0 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
2 Hb_000221_220 0.104944101 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
3 Hb_000531_020 0.106287189 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
4 Hb_000883_050 0.1111906693 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
5 Hb_003050_080 0.114138466 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_000479_010 0.1162274873 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
7 Hb_007101_130 0.1184666404 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007317_210 0.1190855298 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
9 Hb_000988_080 0.1200465323 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000056_200 0.1210968001 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
11 Hb_000487_250 0.1227722463 - - 60S ribosomal protein L27e, putative [Ricinus communis]
12 Hb_000444_050 0.1234450328 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
13 Hb_003055_120 0.1238657106 - - Protein C20orf11, putative [Ricinus communis]
14 Hb_000086_070 0.1238710078 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
15 Hb_023732_070 0.1246210462 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
16 Hb_005618_140 0.1249941192 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
17 Hb_000012_220 0.1253017633 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011571_010 0.1256526645 - - Metal tolerance protein C4, putative [Ricinus communis]
19 Hb_001184_110 0.1265404447 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
20 Hb_000380_190 0.1268878054 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_020247_040 Hb_020247_040 Hb_000221_220 Hb_000221_220 Hb_020247_040--Hb_000221_220 Hb_000531_020 Hb_000531_020 Hb_020247_040--Hb_000531_020 Hb_000883_050 Hb_000883_050 Hb_020247_040--Hb_000883_050 Hb_003050_080 Hb_003050_080 Hb_020247_040--Hb_003050_080 Hb_000479_010 Hb_000479_010 Hb_020247_040--Hb_000479_010 Hb_007101_130 Hb_007101_130 Hb_020247_040--Hb_007101_130 Hb_001828_090 Hb_001828_090 Hb_000221_220--Hb_001828_090 Hb_002603_100 Hb_002603_100 Hb_000221_220--Hb_002603_100 Hb_007426_230 Hb_007426_230 Hb_000221_220--Hb_007426_230 Hb_012762_050 Hb_012762_050 Hb_000221_220--Hb_012762_050 Hb_004195_160 Hb_004195_160 Hb_000221_220--Hb_004195_160 Hb_011571_020 Hb_011571_020 Hb_000221_220--Hb_011571_020 Hb_000025_530 Hb_000025_530 Hb_000531_020--Hb_000025_530 Hb_000260_080 Hb_000260_080 Hb_000531_020--Hb_000260_080 Hb_000531_020--Hb_000883_050 Hb_000703_140 Hb_000703_140 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_000531_020--Hb_001828_090 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001109_020 Hb_001109_020 Hb_000883_050--Hb_001109_020 Hb_003927_130 Hb_003927_130 Hb_000883_050--Hb_003927_130 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000883_050--Hb_000703_140 Hb_000883_050--Hb_000260_080 Hb_063716_050 Hb_063716_050 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000056_200 Hb_000056_200 Hb_003050_080--Hb_000056_200 Hb_001140_060 Hb_001140_060 Hb_000479_010--Hb_001140_060 Hb_008300_010 Hb_008300_010 Hb_000479_010--Hb_008300_010 Hb_012753_160 Hb_012753_160 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_021409_030 Hb_021409_030 Hb_000479_010--Hb_021409_030 Hb_007672_010 Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8024 6.10625 11.9615 5.79921 16.8016 34.386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7262 50.2046 31.0649 12.2881 6.84571

CAGE analysis