Hb_006472_010

Information

Type -
Description -
Location Contig6472: 4397-5902
Sequence    

Annotation

kegg
ID cic:CICLE_v10028249mg
description hypothetical protein
nr
ID XP_006424800.1
description hypothetical protein CICLE_v10028249mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SGS2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028249mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006472_010 0.0 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
2 Hb_009048_040 0.0914411736 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
3 Hb_000080_190 0.0914714904 - - -
4 Hb_007632_220 0.0978253049 - - RNA-binding protein, putative [Ricinus communis]
5 Hb_085781_010 0.0993443791 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
6 Hb_005754_060 0.1021045207 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004109_190 0.1027839019 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
8 Hb_000236_070 0.1067209674 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002687_110 0.1112340828 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_007951_050 0.112148488 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_011310_070 0.1138109369 - - ADP,ATP carrier protein, putative [Ricinus communis]
12 Hb_005489_110 0.1152953284 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
13 Hb_002769_050 0.1167611542 - - PREDICTED: endophilin-A1 [Jatropha curcas]
14 Hb_005625_020 0.1173273254 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
15 Hb_002496_050 0.1183901988 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
16 Hb_011571_010 0.1187144235 - - Metal tolerance protein C4, putative [Ricinus communis]
17 Hb_006693_030 0.1191565874 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
18 Hb_004109_090 0.1198342614 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_011316_040 0.1198549351 - - peptidase, putative [Ricinus communis]
20 Hb_007426_030 0.1198876938 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]

Gene co-expression network

sample Hb_006472_010 Hb_006472_010 Hb_009048_040 Hb_009048_040 Hb_006472_010--Hb_009048_040 Hb_000080_190 Hb_000080_190 Hb_006472_010--Hb_000080_190 Hb_007632_220 Hb_007632_220 Hb_006472_010--Hb_007632_220 Hb_085781_010 Hb_085781_010 Hb_006472_010--Hb_085781_010 Hb_005754_060 Hb_005754_060 Hb_006472_010--Hb_005754_060 Hb_004109_190 Hb_004109_190 Hb_006472_010--Hb_004109_190 Hb_009048_040--Hb_005754_060 Hb_004109_090 Hb_004109_090 Hb_009048_040--Hb_004109_090 Hb_003195_070 Hb_003195_070 Hb_009048_040--Hb_003195_070 Hb_005489_110 Hb_005489_110 Hb_009048_040--Hb_005489_110 Hb_009048_040--Hb_000080_190 Hb_002506_020 Hb_002506_020 Hb_009048_040--Hb_002506_020 Hb_002687_110 Hb_002687_110 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_007632_220--Hb_085781_010 Hb_000047_030 Hb_000047_030 Hb_007632_220--Hb_000047_030 Hb_000574_390 Hb_000574_390 Hb_007632_220--Hb_000574_390 Hb_013405_030 Hb_013405_030 Hb_007632_220--Hb_013405_030 Hb_002686_290 Hb_002686_290 Hb_007632_220--Hb_002686_290 Hb_015198_020 Hb_015198_020 Hb_007632_220--Hb_015198_020 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_071736_010 Hb_071736_010 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_000023_140 Hb_000023_140 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_183086_060 Hb_183086_060 Hb_004109_190--Hb_183086_060 Hb_004109_190--Hb_002687_110 Hb_004724_420 Hb_004724_420 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01482 0.305686 0.650552 0.57699 1.77444 2.99444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76184 2.1057 3.44565 0.958514 1.44536

CAGE analysis