Hb_000012_450

Information

Type -
Description -
Location Contig12: 635607-637591
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24610g
description POPTRDRAFT_653910; hypothetical protein
nr
ID XP_012077296.1
description PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07676 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_450 0.0 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
2 Hb_000599_090 0.1241980688 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
3 Hb_000563_590 0.1251357424 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
4 Hb_000061_160 0.1294862375 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
5 Hb_007441_180 0.1298867557 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011465_040 0.1320693412 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
7 Hb_000085_300 0.1325039883 - - -
8 Hb_102864_010 0.1332165912 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
9 Hb_011139_020 0.1342627198 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
10 Hb_183963_020 0.1351674515 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
11 Hb_034585_040 0.1351778908 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
12 Hb_001621_180 0.1375876326 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
13 Hb_001104_120 0.1382000629 - - -
14 Hb_009252_130 0.139402285 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
15 Hb_001035_030 0.1412555368 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
16 Hb_001454_330 0.1445910333 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
17 Hb_009404_020 0.1447175589 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001366_230 0.145600608 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000291_200 0.1463805586 - - -
20 Hb_000111_280 0.1468902384 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000012_450 Hb_000012_450 Hb_000599_090 Hb_000599_090 Hb_000012_450--Hb_000599_090 Hb_000563_590 Hb_000563_590 Hb_000012_450--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_000012_450--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_000012_450--Hb_007441_180 Hb_011465_040 Hb_011465_040 Hb_000012_450--Hb_011465_040 Hb_000085_300 Hb_000085_300 Hb_000012_450--Hb_000085_300 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000111_280 Hb_000111_280 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_000061_160--Hb_001104_120 Hb_000777_060 Hb_000777_060 Hb_000061_160--Hb_000777_060 Hb_000061_160--Hb_001621_180 Hb_000061_160--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_000061_160--Hb_000032_260 Hb_000330_170 Hb_000330_170 Hb_000061_160--Hb_000330_170 Hb_007441_180--Hb_001621_180 Hb_007441_180--Hb_001104_120 Hb_007441_180--Hb_000563_590 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_005701_020 Hb_005701_020 Hb_011465_040--Hb_005701_020 Hb_000030_100 Hb_000030_100 Hb_011465_040--Hb_000030_100 Hb_009404_020 Hb_009404_020 Hb_011465_040--Hb_009404_020 Hb_000376_050 Hb_000376_050 Hb_011465_040--Hb_000376_050 Hb_002918_200 Hb_002918_200 Hb_011465_040--Hb_002918_200 Hb_000703_140 Hb_000703_140 Hb_011465_040--Hb_000703_140 Hb_000085_300--Hb_183963_020 Hb_002387_060 Hb_002387_060 Hb_000085_300--Hb_002387_060 Hb_025087_010 Hb_025087_010 Hb_000085_300--Hb_025087_010 Hb_000032_220 Hb_000032_220 Hb_000085_300--Hb_000032_220 Hb_007021_020 Hb_007021_020 Hb_000085_300--Hb_007021_020 Hb_001722_040 Hb_001722_040 Hb_000085_300--Hb_001722_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37796 0.115132 0.0161474 0.209495 2.06252 2.13849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56799 4.62214 2.29087 0.843059 0.636617

CAGE analysis