Hb_000487_330

Information

Type -
Description -
Location Contig487: 278813-284281
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46240g
description POPTRDRAFT_753647; AAA-type ATPase family protein
nr
ID XP_011030732.1
description PREDICTED: ATPase family AAA domain-containing protein 3-like [Populus euphratica]
swissprot
ID Q6NVR9
description ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1
trembl
ID B9GK02
description AAA-type ATPase family protein OS=Populus trichocarpa GN=POPTR_0001s46240g PE=4 SV=1
Gene Ontology
ID GO:0000166
description atpase family aaa domain-containing protein 3-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_330 0.0 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Populus euphratica]
2 Hb_004306_050 0.1277227628 - - unnamed protein product [Vitis vinifera]
3 Hb_029223_030 0.1784824302 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
4 Hb_001842_070 0.1845471256 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
5 Hb_002248_050 0.1900144171 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
6 Hb_000012_450 0.1916605763 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
7 Hb_000300_010 0.1975032357 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_000111_280 0.197658809 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
9 Hb_000270_320 0.1990350366 - - hypothetical protein RCOM_1512920 [Ricinus communis]
10 Hb_000340_430 0.1995501037 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_033594_130 0.2005568794 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
12 Hb_020247_040 0.2011543909 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
13 Hb_102864_010 0.2024478969 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
14 Hb_024650_050 0.205865716 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
15 Hb_000252_040 0.2066336368 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
16 Hb_007760_030 0.2093734937 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_000144_090 0.2105698928 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
18 Hb_000329_600 0.2107599081 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
19 Hb_116349_150 0.2109677465 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_002374_460 0.2113700707 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000487_330 Hb_000487_330 Hb_004306_050 Hb_004306_050 Hb_000487_330--Hb_004306_050 Hb_029223_030 Hb_029223_030 Hb_000487_330--Hb_029223_030 Hb_001842_070 Hb_001842_070 Hb_000487_330--Hb_001842_070 Hb_002248_050 Hb_002248_050 Hb_000487_330--Hb_002248_050 Hb_000012_450 Hb_000012_450 Hb_000487_330--Hb_000012_450 Hb_000300_010 Hb_000300_010 Hb_000487_330--Hb_000300_010 Hb_033594_130 Hb_033594_130 Hb_004306_050--Hb_033594_130 Hb_000270_320 Hb_000270_320 Hb_004306_050--Hb_000270_320 Hb_004306_050--Hb_001842_070 Hb_006472_010 Hb_006472_010 Hb_004306_050--Hb_006472_010 Hb_020247_040 Hb_020247_040 Hb_004306_050--Hb_020247_040 Hb_116349_150 Hb_116349_150 Hb_029223_030--Hb_116349_150 Hb_183963_020 Hb_183963_020 Hb_029223_030--Hb_183963_020 Hb_000563_590 Hb_000563_590 Hb_029223_030--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_029223_030--Hb_000032_260 Hb_009026_050 Hb_009026_050 Hb_029223_030--Hb_009026_050 Hb_002326_030 Hb_002326_030 Hb_029223_030--Hb_002326_030 Hb_007760_030 Hb_007760_030 Hb_001842_070--Hb_007760_030 Hb_011224_080 Hb_011224_080 Hb_001842_070--Hb_011224_080 Hb_000317_430 Hb_000317_430 Hb_001842_070--Hb_000317_430 Hb_000365_360 Hb_000365_360 Hb_001842_070--Hb_000365_360 Hb_063134_010 Hb_063134_010 Hb_001842_070--Hb_063134_010 Hb_006693_030 Hb_006693_030 Hb_001842_070--Hb_006693_030 Hb_103873_010 Hb_103873_010 Hb_002248_050--Hb_103873_010 Hb_002301_320 Hb_002301_320 Hb_002248_050--Hb_002301_320 Hb_000421_190 Hb_000421_190 Hb_002248_050--Hb_000421_190 Hb_002835_170 Hb_002835_170 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_000329_600 Hb_000329_600 Hb_002248_050--Hb_000329_600 Hb_000599_090 Hb_000599_090 Hb_000012_450--Hb_000599_090 Hb_000012_450--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_000012_450--Hb_000061_160 Hb_007441_180 Hb_007441_180 Hb_000012_450--Hb_007441_180 Hb_011465_040 Hb_011465_040 Hb_000012_450--Hb_011465_040 Hb_000085_300 Hb_000085_300 Hb_000012_450--Hb_000085_300 Hb_092272_020 Hb_092272_020 Hb_000300_010--Hb_092272_020 Hb_000144_090 Hb_000144_090 Hb_000300_010--Hb_000144_090 Hb_000300_010--Hb_002248_050 Hb_008725_200 Hb_008725_200 Hb_000300_010--Hb_008725_200 Hb_004968_060 Hb_004968_060 Hb_000300_010--Hb_004968_060 Hb_000300_010--Hb_029223_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.641696 0 0.0995837 0 0.339099 0.914119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398461 1.17522 0.793878 0.157484 0.24066

CAGE analysis