Hb_000816_130

Information

Type -
Description -
Location Contig816: 101055-105631
Sequence    

Annotation

kegg
ID rcu:RCOM_0688790
description hypothetical protein
nr
ID XP_012091192.1
description PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S4B1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59411: 100934-101494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_130 0.0 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
2 Hb_000990_080 0.1657124961 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_003016_020 0.1721079437 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
4 Hb_000576_010 0.1769939004 - - PREDICTED: uncharacterized protein LOC105638289 [Jatropha curcas]
5 Hb_116349_160 0.1810825489 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
6 Hb_000307_140 0.1834115132 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
7 Hb_033843_010 0.1873395057 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
8 Hb_004705_040 0.1876352472 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
9 Hb_003477_010 0.1892805369 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
10 Hb_027746_010 0.1895356706 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
11 Hb_007594_030 0.1924278819 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
12 Hb_145314_010 0.1928733067 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
13 Hb_003502_080 0.193868319 - - vacuolar protein sorting, putative [Ricinus communis]
14 Hb_000085_180 0.1948973973 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
15 Hb_003589_090 0.1949340432 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
16 Hb_000573_020 0.1949569698 transcription factor TF Family: Orphans receptor histidine kinase, putative [Ricinus communis]
17 Hb_002774_060 0.1958922479 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
18 Hb_000656_040 0.1966290254 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
19 Hb_010172_080 0.1966427599 - - acetylglucosaminyltransferase, putative [Ricinus communis]
20 Hb_114893_020 0.1967547782 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_130 Hb_000816_130 Hb_000990_080 Hb_000990_080 Hb_000816_130--Hb_000990_080 Hb_003016_020 Hb_003016_020 Hb_000816_130--Hb_003016_020 Hb_000576_010 Hb_000576_010 Hb_000816_130--Hb_000576_010 Hb_116349_160 Hb_116349_160 Hb_000816_130--Hb_116349_160 Hb_000307_140 Hb_000307_140 Hb_000816_130--Hb_000307_140 Hb_033843_010 Hb_033843_010 Hb_000816_130--Hb_033843_010 Hb_001252_100 Hb_001252_100 Hb_000990_080--Hb_001252_100 Hb_000120_240 Hb_000120_240 Hb_000990_080--Hb_000120_240 Hb_000761_020 Hb_000761_020 Hb_000990_080--Hb_000761_020 Hb_000023_140 Hb_000023_140 Hb_000990_080--Hb_000023_140 Hb_001823_100 Hb_001823_100 Hb_000990_080--Hb_001823_100 Hb_000299_040 Hb_000299_040 Hb_000990_080--Hb_000299_040 Hb_013726_020 Hb_013726_020 Hb_003016_020--Hb_013726_020 Hb_001360_040 Hb_001360_040 Hb_003016_020--Hb_001360_040 Hb_008511_130 Hb_008511_130 Hb_003016_020--Hb_008511_130 Hb_003206_070 Hb_003206_070 Hb_003016_020--Hb_003206_070 Hb_000620_010 Hb_000620_010 Hb_003016_020--Hb_000620_010 Hb_003016_020--Hb_000761_020 Hb_000317_030 Hb_000317_030 Hb_000576_010--Hb_000317_030 Hb_004994_170 Hb_004994_170 Hb_000576_010--Hb_004994_170 Hb_004204_070 Hb_004204_070 Hb_000576_010--Hb_004204_070 Hb_004223_130 Hb_004223_130 Hb_000576_010--Hb_004223_130 Hb_010381_070 Hb_010381_070 Hb_000576_010--Hb_010381_070 Hb_000975_290 Hb_000975_290 Hb_000576_010--Hb_000975_290 Hb_000956_130 Hb_000956_130 Hb_116349_160--Hb_000956_130 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_028358_010 Hb_028358_010 Hb_116349_160--Hb_028358_010 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030 Hb_000085_180 Hb_000085_180 Hb_000307_140--Hb_000085_180 Hb_005725_080 Hb_005725_080 Hb_000307_140--Hb_005725_080 Hb_002188_130 Hb_002188_130 Hb_000307_140--Hb_002188_130 Hb_002774_060 Hb_002774_060 Hb_000307_140--Hb_002774_060 Hb_001269_680 Hb_001269_680 Hb_000307_140--Hb_001269_680 Hb_000442_150 Hb_000442_150 Hb_000307_140--Hb_000442_150 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.472915 0.0637309 0.262827 0.284464 0.179717 0.422668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.349315 0.137292 0.365097 0.140002 0

CAGE analysis