Hb_000512_070

Information

Type -
Description -
Location Contig512: 74247-77104
Sequence    

Annotation

kegg
ID tcc:TCM_041131
description SGNH hydrolase-type esterase superfamily protein, putative isoform 1
nr
ID XP_012066391.1
description PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
swissprot
ID Q9FVV1
description GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1
trembl
ID A0A067LEH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23852 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g71250-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_070 0.0 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
2 Hb_006268_020 0.2041349997 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
3 Hb_004103_030 0.2149288207 - - conserved hypothetical protein [Ricinus communis]
4 Hb_130194_010 0.218346456 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
5 Hb_032496_010 0.2213033881 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
6 Hb_004881_100 0.2277535809 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
7 Hb_000251_090 0.2427595271 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
8 Hb_007590_070 0.2577450946 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
9 Hb_001242_090 0.2585904698 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
10 Hb_052689_010 0.2592695123 - - heat shock cognate protein [Solanum commersonii]
11 Hb_000000_100 0.2626395145 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
12 Hb_008695_140 0.2671475813 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
13 Hb_000304_060 0.2693788093 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
14 Hb_008494_050 0.2725098559 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
15 Hb_008760_010 0.274044718 - - berberine bridge enzyme [Hevea brasiliensis]
16 Hb_000566_030 0.276843442 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_007747_140 0.2770111183 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
18 Hb_177179_010 0.2779501227 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
19 Hb_004846_160 0.2794929428 - - -
20 Hb_003688_160 0.2802825504 - - Presenilin-like family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000512_070 Hb_000512_070 Hb_006268_020 Hb_006268_020 Hb_000512_070--Hb_006268_020 Hb_004103_030 Hb_004103_030 Hb_000512_070--Hb_004103_030 Hb_130194_010 Hb_130194_010 Hb_000512_070--Hb_130194_010 Hb_032496_010 Hb_032496_010 Hb_000512_070--Hb_032496_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000251_090 Hb_000251_090 Hb_000512_070--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000820_050 Hb_000820_050 Hb_006268_020--Hb_000820_050 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_000115_010 Hb_000115_010 Hb_006268_020--Hb_000115_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_000000_100 Hb_000000_100 Hb_004103_030--Hb_000000_100 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_001523_020 Hb_001523_020 Hb_130194_010--Hb_001523_020 Hb_037226_010 Hb_037226_010 Hb_130194_010--Hb_037226_010 Hb_002513_030 Hb_002513_030 Hb_130194_010--Hb_002513_030 Hb_130194_010--Hb_032496_010 Hb_036311_020 Hb_036311_020 Hb_130194_010--Hb_036311_020 Hb_000783_030 Hb_000783_030 Hb_032496_010--Hb_000783_030 Hb_032496_010--Hb_006268_020 Hb_032496_010--Hb_001523_020 Hb_029888_010 Hb_029888_010 Hb_032496_010--Hb_029888_010 Hb_004881_100--Hb_001242_090 Hb_004881_100--Hb_004103_030 Hb_177179_010 Hb_177179_010 Hb_004881_100--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_004881_100--Hb_002289_130 Hb_001506_010 Hb_001506_010 Hb_004881_100--Hb_001506_010 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0575442 0.0637986 0.0446221 0.0455745 0.0731554 0.0337391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0344911 0.383648 0.290517 0.0711127

CAGE analysis