Hb_037226_010

Information

Type -
Description -
Location Contig37226: 914-1802
Sequence    

Annotation

kegg
ID rcu:RCOM_0611160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089399.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
swissprot
ID Q94JX6
description Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2
trembl
ID A0A067JLU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23591 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037226_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
2 Hb_008948_040 0.2403901784 - - grr1, plant, putative [Ricinus communis]
3 Hb_003906_090 0.2443750987 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
4 Hb_007075_050 0.2463072502 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_130194_010 0.2496237837 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
6 Hb_101808_010 0.2597766977 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
7 Hb_004690_040 0.2629008663 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
8 Hb_004631_220 0.2640522318 - - -
9 Hb_025557_030 0.2654395123 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
10 Hb_000574_350 0.2672676515 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
11 Hb_000318_330 0.2679417116 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
12 Hb_001189_050 0.2684412624 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
13 Hb_000025_520 0.2692108616 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
14 Hb_000019_060 0.2698710743 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
15 Hb_027472_170 0.2709530038 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
16 Hb_000935_050 0.2718020347 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
17 Hb_170698_010 0.2732966059 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
18 Hb_001898_070 0.2750712323 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
19 Hb_161072_010 0.2751311802 - - -
20 Hb_002496_040 0.2753311267 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_037226_010 Hb_037226_010 Hb_008948_040 Hb_008948_040 Hb_037226_010--Hb_008948_040 Hb_003906_090 Hb_003906_090 Hb_037226_010--Hb_003906_090 Hb_007075_050 Hb_007075_050 Hb_037226_010--Hb_007075_050 Hb_130194_010 Hb_130194_010 Hb_037226_010--Hb_130194_010 Hb_101808_010 Hb_101808_010 Hb_037226_010--Hb_101808_010 Hb_004690_040 Hb_004690_040 Hb_037226_010--Hb_004690_040 Hb_168319_030 Hb_168319_030 Hb_008948_040--Hb_168319_030 Hb_000019_060 Hb_000019_060 Hb_008948_040--Hb_000019_060 Hb_000366_090 Hb_000366_090 Hb_008948_040--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_008948_040--Hb_004375_150 Hb_012799_100 Hb_012799_100 Hb_008948_040--Hb_012799_100 Hb_027472_170 Hb_027472_170 Hb_008948_040--Hb_027472_170 Hb_003906_090--Hb_101808_010 Hb_001189_050 Hb_001189_050 Hb_003906_090--Hb_001189_050 Hb_029510_040 Hb_029510_040 Hb_003906_090--Hb_029510_040 Hb_003906_090--Hb_000019_060 Hb_007645_080 Hb_007645_080 Hb_003906_090--Hb_007645_080 Hb_001357_010 Hb_001357_010 Hb_003906_090--Hb_001357_010 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_007075_050--Hb_000019_060 Hb_000236_140 Hb_000236_140 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_001523_020 Hb_001523_020 Hb_130194_010--Hb_001523_020 Hb_000512_070 Hb_000512_070 Hb_130194_010--Hb_000512_070 Hb_002513_030 Hb_002513_030 Hb_130194_010--Hb_002513_030 Hb_032496_010 Hb_032496_010 Hb_130194_010--Hb_032496_010 Hb_036311_020 Hb_036311_020 Hb_130194_010--Hb_036311_020 Hb_170698_010 Hb_170698_010 Hb_101808_010--Hb_170698_010 Hb_101808_010--Hb_001189_050 Hb_001294_010 Hb_001294_010 Hb_101808_010--Hb_001294_010 Hb_001898_070 Hb_001898_070 Hb_101808_010--Hb_001898_070 Hb_101808_010--Hb_001357_010 Hb_000107_420 Hb_000107_420 Hb_004690_040--Hb_000107_420 Hb_004846_070 Hb_004846_070 Hb_004690_040--Hb_004846_070 Hb_004690_040--Hb_001898_070 Hb_002918_180 Hb_002918_180 Hb_004690_040--Hb_002918_180 Hb_011716_030 Hb_011716_030 Hb_004690_040--Hb_011716_030 Hb_004374_070 Hb_004374_070 Hb_004690_040--Hb_004374_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156606 0.336722 0 0.0234128 0.152024 0.145509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.471296 0.773264 0.266289 0.0954111

CAGE analysis