Hb_002513_030

Information

Type -
Description -
Location Contig2513: 15015-25413
Sequence    

Annotation

kegg
ID rcu:RCOM_0174300
description hypothetical protein
nr
ID XP_010936549.1
description PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID B9SNA6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174300 PE=4 SV=1
Gene Ontology
ID GO:0003824
description alpha-l-fucosidase 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002513_030 0.0 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
2 Hb_004724_230 0.1847066829 - - hypothetical protein JCGZ_12701 [Jatropha curcas]
3 Hb_177179_010 0.2019983264 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
4 Hb_054127_050 0.2056996116 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
5 Hb_001523_020 0.2153810595 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
6 Hb_004553_020 0.2288540515 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
7 Hb_001780_120 0.2345074397 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
8 Hb_001545_210 0.2383726923 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
9 Hb_000422_120 0.2473177104 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Jatropha curcas]
10 Hb_130194_010 0.2531600195 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
11 Hb_006280_010 0.256268087 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
12 Hb_010417_010 0.2627205201 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_010142_080 0.2645419808 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
14 Hb_001222_050 0.2647422058 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
15 Hb_002073_120 0.2653203877 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
16 Hb_000637_120 0.2690918205 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
17 Hb_003226_290 0.271890237 - - catalytic, putative [Ricinus communis]
18 Hb_001242_090 0.2746267603 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
19 Hb_005532_010 0.2755806593 - - -
20 Hb_001035_070 0.2798692712 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]

Gene co-expression network

sample Hb_002513_030 Hb_002513_030 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_177179_010 Hb_177179_010 Hb_002513_030--Hb_177179_010 Hb_054127_050 Hb_054127_050 Hb_002513_030--Hb_054127_050 Hb_001523_020 Hb_001523_020 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_001780_120 Hb_001780_120 Hb_002513_030--Hb_001780_120 Hb_000422_120 Hb_000422_120 Hb_004724_230--Hb_000422_120 Hb_004724_230--Hb_054127_050 Hb_004724_230--Hb_004553_020 Hb_001660_020 Hb_001660_020 Hb_004724_230--Hb_001660_020 Hb_004724_230--Hb_001523_020 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_001242_090 Hb_001242_090 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_054127_050--Hb_001523_020 Hb_054127_050--Hb_000422_120 Hb_001006_240 Hb_001006_240 Hb_054127_050--Hb_001006_240 Hb_054127_050--Hb_001242_090 Hb_036311_020 Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_001523_020--Hb_001780_120 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_004553_020--Hb_000362_120 Hb_005188_090 Hb_005188_090 Hb_004553_020--Hb_005188_090 Hb_005043_010 Hb_005043_010 Hb_004553_020--Hb_005043_010 Hb_000172_560 Hb_000172_560 Hb_004553_020--Hb_000172_560 Hb_001616_120 Hb_001616_120 Hb_004553_020--Hb_001616_120 Hb_005701_010 Hb_005701_010 Hb_004553_020--Hb_005701_010 Hb_119504_010 Hb_119504_010 Hb_001780_120--Hb_119504_010 Hb_001780_120--Hb_001222_050 Hb_001035_070 Hb_001035_070 Hb_001780_120--Hb_001035_070 Hb_001780_120--Hb_000422_120 Hb_001780_120--Hb_004553_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.265435 0.141917 0.0132846 0.0989479 0.485907 0.827083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305179 0.27215 5.99482 1.92181 0.61058

CAGE analysis