Hb_006280_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig6280: 18539-21662
Sequence    

Annotation

kegg
ID rcu:RCOM_1070220
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID XP_012073677.1
description PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
swissprot
ID P47927
description Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
trembl
ID A0A067LNU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06660 PE=4 SV=1
Gene Ontology
ID GO:0008152
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51758: 19033-19774 , PASA_asmbl_51759: 20245-21056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006280_010 0.0 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
2 Hb_004460_010 0.2459786805 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
3 Hb_001035_070 0.2476407659 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
4 Hb_002513_030 0.256268087 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
5 Hb_000213_080 0.2563112948 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
6 Hb_177179_010 0.2567419981 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
7 Hb_001277_090 0.2592498681 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
8 Hb_000964_060 0.2661614067 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
9 Hb_003333_050 0.2697201583 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
10 Hb_000226_100 0.2700014994 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_001780_120 0.2759963042 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
12 Hb_029866_030 0.2793679549 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
13 Hb_000276_050 0.2807218385 - - -
14 Hb_001523_020 0.2815175467 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
15 Hb_000043_070 0.2860300867 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
16 Hb_119504_010 0.2894815273 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
17 Hb_001943_020 0.2907703967 - - PREDICTED: (S)-coclaurine N-methyltransferase-like, partial [Populus euphratica]
18 Hb_000141_240 0.2937260138 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
19 Hb_000446_060 0.2937346099 - - -
20 Hb_003599_070 0.2955997796 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006280_010 Hb_006280_010 Hb_004460_010 Hb_004460_010 Hb_006280_010--Hb_004460_010 Hb_001035_070 Hb_001035_070 Hb_006280_010--Hb_001035_070 Hb_002513_030 Hb_002513_030 Hb_006280_010--Hb_002513_030 Hb_000213_080 Hb_000213_080 Hb_006280_010--Hb_000213_080 Hb_177179_010 Hb_177179_010 Hb_006280_010--Hb_177179_010 Hb_001277_090 Hb_001277_090 Hb_006280_010--Hb_001277_090 Hb_013818_060 Hb_013818_060 Hb_004460_010--Hb_013818_060 Hb_001799_080 Hb_001799_080 Hb_004460_010--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_004460_010--Hb_000120_120 Hb_011360_080 Hb_011360_080 Hb_004460_010--Hb_011360_080 Hb_003599_070 Hb_003599_070 Hb_004460_010--Hb_003599_070 Hb_000477_080 Hb_000477_080 Hb_004460_010--Hb_000477_080 Hb_001053_150 Hb_001053_150 Hb_001035_070--Hb_001053_150 Hb_004429_070 Hb_004429_070 Hb_001035_070--Hb_004429_070 Hb_000141_030 Hb_000141_030 Hb_001035_070--Hb_000141_030 Hb_001035_070--Hb_001277_090 Hb_002078_480 Hb_002078_480 Hb_001035_070--Hb_002078_480 Hb_029510_040 Hb_029510_040 Hb_001035_070--Hb_029510_040 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_002513_030--Hb_177179_010 Hb_054127_050 Hb_054127_050 Hb_002513_030--Hb_054127_050 Hb_001523_020 Hb_001523_020 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_001780_120 Hb_001780_120 Hb_002513_030--Hb_001780_120 Hb_000213_080--Hb_001277_090 Hb_000043_070 Hb_000043_070 Hb_000213_080--Hb_000043_070 Hb_000077_060 Hb_000077_060 Hb_000213_080--Hb_000077_060 Hb_000213_080--Hb_177179_010 Hb_067769_010 Hb_067769_010 Hb_000213_080--Hb_067769_010 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_001242_090 Hb_001242_090 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_004881_100 Hb_004881_100 Hb_177179_010--Hb_004881_100 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_001277_090--Hb_000141_030 Hb_006153_080 Hb_006153_080 Hb_001277_090--Hb_006153_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.518988 0 0.188682 0.0725616 0.101989 0.0932034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21286 0.167452 3.96707 0.546748 0.464793

CAGE analysis