Hb_067769_010

Information

Type -
Description -
Location Contig67769: 12-3579
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067769_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_002571_090 0.2475263151 - - -
3 Hb_000504_130 0.2619747251 - - GPI transamidase component family protein [Populus trichocarpa]
4 Hb_000065_050 0.2684390036 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000574_550 0.2763915267 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
6 Hb_000205_340 0.2776545639 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
7 Hb_000296_060 0.2807025735 - - -
8 Hb_187513_010 0.2912810951 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
9 Hb_002360_020 0.3081352618 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_012424_010 0.3119067788 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_003551_030 0.3121687131 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
12 Hb_001652_110 0.3141975954 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
13 Hb_032531_010 0.3176696745 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012295_020 0.3190348367 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
15 Hb_000213_080 0.3200354342 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
16 Hb_012071_010 0.3205500538 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_001987_010 0.3219542703 - - -
18 Hb_000276_050 0.3224043377 - - -
19 Hb_029866_030 0.3254301346 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
20 Hb_005007_040 0.3273044374 - - hypothetical protein VITISV_032357 [Vitis vinifera]

Gene co-expression network

sample Hb_067769_010 Hb_067769_010 Hb_002571_090 Hb_002571_090 Hb_067769_010--Hb_002571_090 Hb_000504_130 Hb_000504_130 Hb_067769_010--Hb_000504_130 Hb_000065_050 Hb_000065_050 Hb_067769_010--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_067769_010--Hb_000574_550 Hb_000205_340 Hb_000205_340 Hb_067769_010--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_067769_010--Hb_000296_060 Hb_002571_090--Hb_000205_340 Hb_002571_090--Hb_000296_060 Hb_002571_090--Hb_000065_050 Hb_002571_090--Hb_000574_550 Hb_187513_010 Hb_187513_010 Hb_002571_090--Hb_187513_010 Hb_003551_030 Hb_003551_030 Hb_002571_090--Hb_003551_030 Hb_000032_480 Hb_000032_480 Hb_000504_130--Hb_000032_480 Hb_007017_020 Hb_007017_020 Hb_000504_130--Hb_007017_020 Hb_035687_010 Hb_035687_010 Hb_000504_130--Hb_035687_010 Hb_119504_010 Hb_119504_010 Hb_000504_130--Hb_119504_010 Hb_002360_020 Hb_002360_020 Hb_000504_130--Hb_002360_020 Hb_012071_010 Hb_012071_010 Hb_000065_050--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_000065_050--Hb_012295_020 Hb_001652_110 Hb_001652_110 Hb_000065_050--Hb_001652_110 Hb_000065_050--Hb_000574_550 Hb_032531_010 Hb_032531_010 Hb_000065_050--Hb_032531_010 Hb_000574_550--Hb_187513_010 Hb_000574_550--Hb_001652_110 Hb_003226_290 Hb_003226_290 Hb_000574_550--Hb_003226_290 Hb_000574_550--Hb_000296_060 Hb_001987_010 Hb_001987_010 Hb_000205_340--Hb_001987_010 Hb_000205_340--Hb_003551_030 Hb_000205_340--Hb_000296_060 Hb_012424_010 Hb_012424_010 Hb_000205_340--Hb_012424_010 Hb_001693_040 Hb_001693_040 Hb_000205_340--Hb_001693_040 Hb_000296_060--Hb_187513_010 Hb_069783_020 Hb_069783_020 Hb_000296_060--Hb_069783_020 Hb_000296_060--Hb_003551_030 Hb_000296_060--Hb_012424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0709533 0 0.31319 0.111581 0.116198

CAGE analysis