Hb_000043_070

Information

Type -
Description -
Location Contig43: 133266-133727
Sequence    

Annotation

kegg
ID rcu:RCOM_2037040
description transcription factor, putative
nr
ID XP_012066261.1
description PREDICTED: transcription factor IBH1 [Jatropha curcas]
swissprot
ID Q9SKX1
description Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1
trembl
ID A0A067L347
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000043_070 0.0 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
2 Hb_006153_080 0.2183884215 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
3 Hb_000579_020 0.2452353213 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
4 Hb_001277_090 0.252307723 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
5 Hb_002150_060 0.2724646554 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
6 Hb_005569_020 0.2735827623 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001946_410 0.2790538939 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
8 Hb_002110_020 0.2844078817 - - PREDICTED: transcription factor bHLH145 [Jatropha curcas]
9 Hb_006280_010 0.2860300867 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
10 Hb_004225_030 0.286706002 - - hypothetical protein F383_15788 [Gossypium arboreum]
11 Hb_000213_080 0.2886544635 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera]
12 Hb_000708_040 0.2892350213 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004052_010 0.2916909649 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
14 Hb_001096_110 0.2928284065 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
15 Hb_027028_030 0.2956754606 - - conserved hypothetical protein [Ricinus communis]
16 Hb_026048_020 0.2980531825 - - PREDICTED: uncharacterized protein LOC105645738 [Jatropha curcas]
17 Hb_005224_010 0.3014788192 - - glycine-rich protein [Bruguiera gymnorhiza]
18 Hb_023732_040 0.3015233874 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000258_330 0.301928797 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_003333_050 0.3021274815 - - hypothetical protein JCGZ_20906 [Jatropha curcas]

Gene co-expression network

sample Hb_000043_070 Hb_000043_070 Hb_006153_080 Hb_006153_080 Hb_000043_070--Hb_006153_080 Hb_000579_020 Hb_000579_020 Hb_000043_070--Hb_000579_020 Hb_001277_090 Hb_001277_090 Hb_000043_070--Hb_001277_090 Hb_002150_060 Hb_002150_060 Hb_000043_070--Hb_002150_060 Hb_005569_020 Hb_005569_020 Hb_000043_070--Hb_005569_020 Hb_001946_410 Hb_001946_410 Hb_000043_070--Hb_001946_410 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_000340_310 Hb_000340_310 Hb_006153_080--Hb_000340_310 Hb_006153_080--Hb_001277_090 Hb_001096_110 Hb_001096_110 Hb_006153_080--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_006153_080--Hb_000130_110 Hb_027028_030 Hb_027028_030 Hb_000579_020--Hb_027028_030 Hb_004871_070 Hb_004871_070 Hb_000579_020--Hb_004871_070 Hb_000457_210 Hb_000457_210 Hb_000579_020--Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000579_020--Hb_003464_030 Hb_007747_140 Hb_007747_140 Hb_000579_020--Hb_007747_140 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_001277_090--Hb_000141_030 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_002150_060--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_002150_060--Hb_003994_190 Hb_001545_100 Hb_001545_100 Hb_002150_060--Hb_001545_100 Hb_002150_060--Hb_001096_110 Hb_002150_060--Hb_006153_080 Hb_000712_050 Hb_000712_050 Hb_002150_060--Hb_000712_050 Hb_005569_020--Hb_001096_110 Hb_000141_020 Hb_000141_020 Hb_005569_020--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_001159_080 Hb_001159_080 Hb_005569_020--Hb_001159_080 Hb_000108_070 Hb_000108_070 Hb_005569_020--Hb_000108_070 Hb_002205_190 Hb_002205_190 Hb_001946_410--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_001946_410--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_001946_410--Hb_000116_010 Hb_008695_140 Hb_008695_140 Hb_001946_410--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_001946_410--Hb_000011_330 Hb_001946_410--Hb_004785_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64596 0.509537 1.02765 0.539324 0.0613916 0.0587988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37987 0.481732 6.01467 1.2621 0.441829

CAGE analysis