Hb_000457_210

Information

Type -
Description -
Location Contig457: 233044-236581
Sequence    

Annotation

kegg
ID rcu:RCOM_1678900
description hypothetical protein
nr
ID XP_012070944.1
description PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
swissprot
ID Q9LK31
description Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=2 SV=1
trembl
ID A0A067LNB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10165 PE=4 SV=1
Gene Ontology
ID GO:0005768
description kelch repeat-containing protein at3g27220-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43476: 233912-236536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000457_210 0.0 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
2 Hb_003464_030 0.1310911503 - - PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]
3 Hb_005306_180 0.1527651881 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
4 Hb_006698_040 0.1559988559 - - bHLH1 transcription factor [Hevea brasiliensis]
5 Hb_084646_010 0.1560478011 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
6 Hb_002217_350 0.1562010952 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
7 Hb_001638_230 0.1577369531 - - RNA-binding region-containing protein, putative [Ricinus communis]
8 Hb_001623_060 0.1632628885 - - potassium channel beta, putative [Ricinus communis]
9 Hb_002205_090 0.1646088457 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_005695_120 0.1657582486 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
11 Hb_187679_010 0.1658290179 - - -
12 Hb_000787_020 0.1662284725 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_000096_010 0.1664823317 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
14 Hb_000212_450 0.1687609112 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
15 Hb_006816_260 0.170183502 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
16 Hb_002681_200 0.1702041572 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
17 Hb_000264_110 0.1716914489 - - PREDICTED: trafficking protein particle complex subunit 13 [Jatropha curcas]
18 Hb_002217_230 0.172930541 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
19 Hb_000538_070 0.1749809491 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
20 Hb_000130_050 0.1761633726 - - 14-3-3 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000457_210 Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000457_210--Hb_003464_030 Hb_005306_180 Hb_005306_180 Hb_000457_210--Hb_005306_180 Hb_006698_040 Hb_006698_040 Hb_000457_210--Hb_006698_040 Hb_084646_010 Hb_084646_010 Hb_000457_210--Hb_084646_010 Hb_002217_350 Hb_002217_350 Hb_000457_210--Hb_002217_350 Hb_001638_230 Hb_001638_230 Hb_000457_210--Hb_001638_230 Hb_003464_030--Hb_005306_180 Hb_006698_080 Hb_006698_080 Hb_003464_030--Hb_006698_080 Hb_003464_030--Hb_084646_010 Hb_003571_030 Hb_003571_030 Hb_003464_030--Hb_003571_030 Hb_002014_020 Hb_002014_020 Hb_003464_030--Hb_002014_020 Hb_000483_260 Hb_000483_260 Hb_005306_180--Hb_000483_260 Hb_000665_050 Hb_000665_050 Hb_005306_180--Hb_000665_050 Hb_000787_020 Hb_000787_020 Hb_005306_180--Hb_000787_020 Hb_001016_120 Hb_001016_120 Hb_005306_180--Hb_001016_120 Hb_015778_010 Hb_015778_010 Hb_005306_180--Hb_015778_010 Hb_005306_180--Hb_002014_020 Hb_006698_040--Hb_084646_010 Hb_001584_120 Hb_001584_120 Hb_006698_040--Hb_001584_120 Hb_155159_020 Hb_155159_020 Hb_006698_040--Hb_155159_020 Hb_000025_630 Hb_000025_630 Hb_006698_040--Hb_000025_630 Hb_187679_010 Hb_187679_010 Hb_006698_040--Hb_187679_010 Hb_172632_120 Hb_172632_120 Hb_006698_040--Hb_172632_120 Hb_000116_270 Hb_000116_270 Hb_084646_010--Hb_000116_270 Hb_084646_010--Hb_001016_120 Hb_084646_010--Hb_155159_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_001159_130 Hb_001159_130 Hb_084646_010--Hb_001159_130 Hb_000853_150 Hb_000853_150 Hb_002217_350--Hb_000853_150 Hb_000783_010 Hb_000783_010 Hb_002217_350--Hb_000783_010 Hb_002217_350--Hb_000483_260 Hb_002205_090 Hb_002205_090 Hb_002217_350--Hb_002205_090 Hb_003304_020 Hb_003304_020 Hb_002217_350--Hb_003304_020 Hb_000720_040 Hb_000720_040 Hb_002217_350--Hb_000720_040 Hb_002217_230 Hb_002217_230 Hb_001638_230--Hb_002217_230 Hb_158092_010 Hb_158092_010 Hb_001638_230--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_189216_030 Hb_189216_030 Hb_001638_230--Hb_189216_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54845 1.06262 3.04343 6.96255 1.24362 2.40012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12576 4.54182 6.64015 6.65135 0.744258

CAGE analysis