Hb_002205_090

Information

Type -
Description -
Location Contig2205: 82059-85711
Sequence    

Annotation

kegg
ID rcu:RCOM_0689650
description superoxide dismutase [mn], putative (EC:1.15.1.1)
nr
ID P35017.1
description RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
swissprot
ID P35017
description Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1
trembl
ID Q9FSJ2
description Superoxide dismutase (Fragment) OS=Hevea brasiliensis GN=sod PE=2 SV=1
Gene Ontology
ID GO:0005759
description superoxide dismutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22714: 82080-85596 , PASA_asmbl_22715: 83055-84030
cDNA
(Sanger)
(ID:Location)		 002_E17.ab1: 82273-85596 , 019_K20.ab1: 82377-85553 , 053_H10.ab1: 82382-85553

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_090 0.0 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
2 Hb_002217_350 0.0874355174 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
3 Hb_000236_040 0.0909770475 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
4 Hb_004070_020 0.0910548619 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
5 Hb_002014_020 0.0913648332 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
6 Hb_000381_120 0.0976688883 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
7 Hb_000050_200 0.1035714203 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
8 Hb_000460_030 0.1082071217 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
9 Hb_000853_150 0.1119647362 - - Fumarase 1 isoform 2 [Theobroma cacao]
10 Hb_001623_060 0.1125921073 - - potassium channel beta, putative [Ricinus communis]
11 Hb_002197_050 0.115305034 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
12 Hb_000094_280 0.1168099614 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
13 Hb_000431_170 0.1168447737 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
14 Hb_031862_100 0.1168621321 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_032808_010 0.1168639558 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
16 Hb_000483_260 0.1180658537 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
17 Hb_000684_380 0.1183753826 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_000028_590 0.1185957012 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
19 Hb_003994_290 0.1186764704 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
20 Hb_000137_090 0.1187852029 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]

Gene co-expression network

sample Hb_002205_090 Hb_002205_090 Hb_002217_350 Hb_002217_350 Hb_002205_090--Hb_002217_350 Hb_000236_040 Hb_000236_040 Hb_002205_090--Hb_000236_040 Hb_004070_020 Hb_004070_020 Hb_002205_090--Hb_004070_020 Hb_002014_020 Hb_002014_020 Hb_002205_090--Hb_002014_020 Hb_000381_120 Hb_000381_120 Hb_002205_090--Hb_000381_120 Hb_000050_200 Hb_000050_200 Hb_002205_090--Hb_000050_200 Hb_000853_150 Hb_000853_150 Hb_002217_350--Hb_000853_150 Hb_000783_010 Hb_000783_010 Hb_002217_350--Hb_000783_010 Hb_000483_260 Hb_000483_260 Hb_002217_350--Hb_000483_260 Hb_003304_020 Hb_003304_020 Hb_002217_350--Hb_003304_020 Hb_000720_040 Hb_000720_040 Hb_002217_350--Hb_000720_040 Hb_000827_050 Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_000236_040--Hb_002014_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_000039_220 Hb_000039_220 Hb_004070_020--Hb_000039_220 Hb_000468_060 Hb_000468_060 Hb_004070_020--Hb_000468_060 Hb_000768_090 Hb_000768_090 Hb_004070_020--Hb_000768_090 Hb_008511_120 Hb_008511_120 Hb_004070_020--Hb_008511_120 Hb_032808_010 Hb_032808_010 Hb_004070_020--Hb_032808_010 Hb_000417_130 Hb_000417_130 Hb_004070_020--Hb_000417_130 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150 Hb_000329_060 Hb_000329_060 Hb_000381_120--Hb_000329_060 Hb_000381_120--Hb_001828_150 Hb_000556_120 Hb_000556_120 Hb_000381_120--Hb_000556_120 Hb_000640_170 Hb_000640_170 Hb_000381_120--Hb_000640_170 Hb_000381_120--Hb_000417_130 Hb_009898_050 Hb_009898_050 Hb_000381_120--Hb_009898_050 Hb_003994_230 Hb_003994_230 Hb_000050_200--Hb_003994_230 Hb_000200_020 Hb_000200_020 Hb_000050_200--Hb_000200_020 Hb_000050_200--Hb_000468_060 Hb_002681_100 Hb_002681_100 Hb_000050_200--Hb_002681_100 Hb_001575_090 Hb_001575_090 Hb_000050_200--Hb_001575_090 Hb_000050_200--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.887 38.8851 127.054 112.839 86.6878 65.527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.378 162.542 128.069 179.688 50.9924

CAGE analysis