Hb_000579_020

Information

Type -
Description -
Location Contig579: 25062-26554
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06850g
description hypothetical protein
nr
ID XP_006372995.1
description hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P921
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06850g PE=2 SV=1
Gene Ontology
ID GO:0010087
description gpi inositol-deacylase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49760: 25232-26563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_020 0.0 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
2 Hb_027028_030 0.2163900323 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004871_070 0.2262706305 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
4 Hb_000457_210 0.2293437965 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
5 Hb_003464_030 0.2429230135 - - PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]
6 Hb_000043_070 0.2452353213 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
7 Hb_007747_140 0.2467923359 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
8 Hb_001638_230 0.252782769 - - RNA-binding region-containing protein, putative [Ricinus communis]
9 Hb_074783_010 0.2556200079 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
10 Hb_005062_080 0.2560101641 - - MLO-like protein 4 [Gossypium arboreum]
11 Hb_000126_110 0.2584542624 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
12 Hb_080128_020 0.2608479999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000731_260 0.2616242446 - - hypothetical protein RCOM_0905090 [Ricinus communis]
14 Hb_084886_010 0.2617539435 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000108_070 0.2620132697 - - alpha-tubulin 1 [Hevea brasiliensis]
16 Hb_004328_040 0.2635677418 - - PREDICTED: wall-associated receptor kinase-like 8 [Vitis vinifera]
17 Hb_000676_190 0.2657085003 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
18 Hb_003571_030 0.2679481378 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
19 Hb_002577_010 0.2709412642 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
20 Hb_000076_140 0.271734968 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000579_020 Hb_000579_020 Hb_027028_030 Hb_027028_030 Hb_000579_020--Hb_027028_030 Hb_004871_070 Hb_004871_070 Hb_000579_020--Hb_004871_070 Hb_000457_210 Hb_000457_210 Hb_000579_020--Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000579_020--Hb_003464_030 Hb_000043_070 Hb_000043_070 Hb_000579_020--Hb_000043_070 Hb_007747_140 Hb_007747_140 Hb_000579_020--Hb_007747_140 Hb_012366_040 Hb_012366_040 Hb_027028_030--Hb_012366_040 Hb_001001_030 Hb_001001_030 Hb_027028_030--Hb_001001_030 Hb_001102_230 Hb_001102_230 Hb_027028_030--Hb_001102_230 Hb_001252_180 Hb_001252_180 Hb_027028_030--Hb_001252_180 Hb_000573_020 Hb_000573_020 Hb_027028_030--Hb_000573_020 Hb_000189_640 Hb_000189_640 Hb_004871_070--Hb_000189_640 Hb_134469_010 Hb_134469_010 Hb_004871_070--Hb_134469_010 Hb_002045_130 Hb_002045_130 Hb_004871_070--Hb_002045_130 Hb_000365_020 Hb_000365_020 Hb_004871_070--Hb_000365_020 Hb_005548_010 Hb_005548_010 Hb_004871_070--Hb_005548_010 Hb_003893_010 Hb_003893_010 Hb_004871_070--Hb_003893_010 Hb_000457_210--Hb_003464_030 Hb_005306_180 Hb_005306_180 Hb_000457_210--Hb_005306_180 Hb_006698_040 Hb_006698_040 Hb_000457_210--Hb_006698_040 Hb_084646_010 Hb_084646_010 Hb_000457_210--Hb_084646_010 Hb_002217_350 Hb_002217_350 Hb_000457_210--Hb_002217_350 Hb_001638_230 Hb_001638_230 Hb_000457_210--Hb_001638_230 Hb_003464_030--Hb_005306_180 Hb_006698_080 Hb_006698_080 Hb_003464_030--Hb_006698_080 Hb_003464_030--Hb_084646_010 Hb_003571_030 Hb_003571_030 Hb_003464_030--Hb_003571_030 Hb_002014_020 Hb_002014_020 Hb_003464_030--Hb_002014_020 Hb_006153_080 Hb_006153_080 Hb_000043_070--Hb_006153_080 Hb_001277_090 Hb_001277_090 Hb_000043_070--Hb_001277_090 Hb_002150_060 Hb_002150_060 Hb_000043_070--Hb_002150_060 Hb_005569_020 Hb_005569_020 Hb_000043_070--Hb_005569_020 Hb_001946_410 Hb_001946_410 Hb_000043_070--Hb_001946_410 Hb_024468_020 Hb_024468_020 Hb_007747_140--Hb_024468_020 Hb_004328_040 Hb_004328_040 Hb_007747_140--Hb_004328_040 Hb_011056_020 Hb_011056_020 Hb_007747_140--Hb_011056_020 Hb_005224_010 Hb_005224_010 Hb_007747_140--Hb_005224_010 Hb_002486_010 Hb_002486_010 Hb_007747_140--Hb_002486_010 Hb_000297_020 Hb_000297_020 Hb_007747_140--Hb_000297_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1791 5.14229 7.05299 17.8745 4.16357 2.74125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2739 5.39584 46.3083 37.844 2.16355

CAGE analysis