Hb_001252_180

Information

Type desease resistance
Description Gene Name: DUF3542
Location Contig1252: 206036-209047
Sequence    

Annotation

kegg
ID rcu:RCOM_1482450
description hypothetical protein
nr
ID XP_002524239.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C8S1
description Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=3 SV=1
trembl
ID B9SE20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1482450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07742: 206051-209326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_180 0.0 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
2 Hb_004225_020 0.109402312 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000327_340 0.1184126873 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
4 Hb_003531_060 0.1282687224 - - unnamed protein product [Coffea canephora]
5 Hb_002493_100 0.1310903112 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
6 Hb_002131_020 0.1314615927 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
7 Hb_148909_010 0.1316983279 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
8 Hb_000318_510 0.1335708724 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
9 Hb_000088_130 0.1337045086 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
10 Hb_030116_020 0.1348671188 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
11 Hb_000072_150 0.1392352998 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
12 Hb_000270_760 0.1397030518 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
13 Hb_135611_010 0.1441053847 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
14 Hb_000244_220 0.1447636415 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
15 Hb_000836_270 0.1447855931 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
16 Hb_007694_050 0.1456863169 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_005321_020 0.147064598 - - splicing factor-related family protein [Populus trichocarpa]
18 Hb_001930_010 0.1471186817 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
19 Hb_002400_310 0.1472151953 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
20 Hb_001001_060 0.147628596 - - -

Gene co-expression network

sample Hb_001252_180 Hb_001252_180 Hb_004225_020 Hb_004225_020 Hb_001252_180--Hb_004225_020 Hb_000327_340 Hb_000327_340 Hb_001252_180--Hb_000327_340 Hb_003531_060 Hb_003531_060 Hb_001252_180--Hb_003531_060 Hb_002493_100 Hb_002493_100 Hb_001252_180--Hb_002493_100 Hb_002131_020 Hb_002131_020 Hb_001252_180--Hb_002131_020 Hb_148909_010 Hb_148909_010 Hb_001252_180--Hb_148909_010 Hb_001001_060 Hb_001001_060 Hb_004225_020--Hb_001001_060 Hb_000915_050 Hb_000915_050 Hb_004225_020--Hb_000915_050 Hb_004225_020--Hb_002131_020 Hb_004204_020 Hb_004204_020 Hb_004225_020--Hb_004204_020 Hb_001663_030 Hb_001663_030 Hb_004225_020--Hb_001663_030 Hb_001516_100 Hb_001516_100 Hb_004225_020--Hb_001516_100 Hb_000616_020 Hb_000616_020 Hb_000327_340--Hb_000616_020 Hb_000270_760 Hb_000270_760 Hb_000327_340--Hb_000270_760 Hb_000244_220 Hb_000244_220 Hb_000327_340--Hb_000244_220 Hb_001268_350 Hb_001268_350 Hb_000327_340--Hb_001268_350 Hb_005699_090 Hb_005699_090 Hb_000327_340--Hb_005699_090 Hb_000343_030 Hb_000343_030 Hb_000327_340--Hb_000343_030 Hb_005321_020 Hb_005321_020 Hb_003531_060--Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_003531_060--Hb_006831_110 Hb_000283_070 Hb_000283_070 Hb_003531_060--Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_003531_060--Hb_000107_500 Hb_011030_010 Hb_011030_010 Hb_003531_060--Hb_011030_010 Hb_033187_050 Hb_033187_050 Hb_003531_060--Hb_033187_050 Hb_002493_100--Hb_004225_020 Hb_002026_100 Hb_002026_100 Hb_002493_100--Hb_002026_100 Hb_002039_010 Hb_002039_010 Hb_002493_100--Hb_002039_010 Hb_002027_120 Hb_002027_120 Hb_002493_100--Hb_002027_120 Hb_002493_100--Hb_001001_060 Hb_002493_100--Hb_001516_100 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_002255_050 Hb_002255_050 Hb_148909_010--Hb_002255_050 Hb_004306_080 Hb_004306_080 Hb_148909_010--Hb_004306_080 Hb_135611_010 Hb_135611_010 Hb_148909_010--Hb_135611_010 Hb_001930_010 Hb_001930_010 Hb_148909_010--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_148909_010--Hb_002255_070 Hb_000088_130 Hb_000088_130 Hb_148909_010--Hb_000088_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.3108 13.9287 2.65543 12.182 20.2828 17.0884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.93041 7.041 18.0611 22.4626 8.17924

CAGE analysis