Hb_012366_040

Information

Type -
Description -
Location Contig12366: 85723-98718
Sequence    

Annotation

kegg
ID pmum:103323696
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_012441256.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A068UUK1
description Coffea canephora DH200=94 genomic scaffold, scaffold_53 OS=Coffea canephora GN=GSCOC_T00033443001 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012366_040 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii]
2 Hb_027028_030 0.2410167592 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001001_030 0.2560438609 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
4 Hb_000362_220 0.2878298771 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
5 Hb_001102_230 0.2953875094 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
6 Hb_007336_040 0.3231884425 - - protein binding protein, putative [Ricinus communis]
7 Hb_000579_020 0.3253530647 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
8 Hb_000080_220 0.3282763308 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001959_040 0.3327776493 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
10 Hb_000326_030 0.3342289492 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
11 Hb_000043_070 0.3349196483 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
12 Hb_010883_100 0.336783288 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
13 Hb_000331_120 0.3372090629 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001749_010 0.3511235208 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
15 Hb_148121_080 0.3530008013 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
16 Hb_080128_020 0.3566283265 - - conserved hypothetical protein [Ricinus communis]
17 Hb_074783_010 0.3595642684 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
18 Hb_005702_030 0.3619688531 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
19 Hb_129722_010 0.3632568152 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
20 Hb_007336_030 0.366368416 - - -

Gene co-expression network

sample Hb_012366_040 Hb_012366_040 Hb_027028_030 Hb_027028_030 Hb_012366_040--Hb_027028_030 Hb_001001_030 Hb_001001_030 Hb_012366_040--Hb_001001_030 Hb_000362_220 Hb_000362_220 Hb_012366_040--Hb_000362_220 Hb_001102_230 Hb_001102_230 Hb_012366_040--Hb_001102_230 Hb_007336_040 Hb_007336_040 Hb_012366_040--Hb_007336_040 Hb_000579_020 Hb_000579_020 Hb_012366_040--Hb_000579_020 Hb_027028_030--Hb_000579_020 Hb_027028_030--Hb_001001_030 Hb_027028_030--Hb_001102_230 Hb_001252_180 Hb_001252_180 Hb_027028_030--Hb_001252_180 Hb_000573_020 Hb_000573_020 Hb_027028_030--Hb_000573_020 Hb_001001_030--Hb_007336_040 Hb_001001_030--Hb_001102_230 Hb_005321_030 Hb_005321_030 Hb_001001_030--Hb_005321_030 Hb_002471_070 Hb_002471_070 Hb_001001_030--Hb_002471_070 Hb_000107_410 Hb_000107_410 Hb_001001_030--Hb_000107_410 Hb_007044_210 Hb_007044_210 Hb_001001_030--Hb_007044_210 Hb_001060_110 Hb_001060_110 Hb_000362_220--Hb_001060_110 Hb_005288_200 Hb_005288_200 Hb_000362_220--Hb_005288_200 Hb_003321_010 Hb_003321_010 Hb_000362_220--Hb_003321_010 Hb_001277_270 Hb_001277_270 Hb_000362_220--Hb_001277_270 Hb_017434_060 Hb_017434_060 Hb_000362_220--Hb_017434_060 Hb_000703_240 Hb_000703_240 Hb_000362_220--Hb_000703_240 Hb_001960_040 Hb_001960_040 Hb_001102_230--Hb_001960_040 Hb_000472_040 Hb_000472_040 Hb_001102_230--Hb_000472_040 Hb_000300_620 Hb_000300_620 Hb_001102_230--Hb_000300_620 Hb_001102_230--Hb_000573_020 Hb_001357_140 Hb_001357_140 Hb_001102_230--Hb_001357_140 Hb_000576_010 Hb_000576_010 Hb_001102_230--Hb_000576_010 Hb_003687_140 Hb_003687_140 Hb_007336_040--Hb_003687_140 Hb_000699_120 Hb_000699_120 Hb_007336_040--Hb_000699_120 Hb_029584_140 Hb_029584_140 Hb_007336_040--Hb_029584_140 Hb_012347_010 Hb_012347_010 Hb_007336_040--Hb_012347_010 Hb_002027_300 Hb_002027_300 Hb_007336_040--Hb_002027_300 Hb_004871_070 Hb_004871_070 Hb_000579_020--Hb_004871_070 Hb_000457_210 Hb_000457_210 Hb_000579_020--Hb_000457_210 Hb_003464_030 Hb_003464_030 Hb_000579_020--Hb_003464_030 Hb_000043_070 Hb_000043_070 Hb_000579_020--Hb_000043_070 Hb_007747_140 Hb_007747_140 Hb_000579_020--Hb_007747_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345283 0.0875718 0.0123264 0.0366953 0.0032721 0.00881397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118434 0.00582555 0.168457 0.103696 0

CAGE analysis