Hb_007336_040

Information

Type -
Description -
Location Contig7336: 38290-39763
Sequence    

Annotation

kegg
ID rcu:RCOM_1589340
description protein binding protein, putative
nr
ID XP_002510167.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9C8S6
description C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana GN=At1g63220 PE=1 SV=1
trembl
ID B9R774
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1589340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56170: 39224-39357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007336_040 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001001_030 0.1841885971 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
3 Hb_003687_140 0.1930028139 - - BnaCnng65050D [Brassica napus]
4 Hb_000699_120 0.1931423103 - - DNA-binding family protein [Populus trichocarpa]
5 Hb_029584_140 0.195123788 - - senescence-associated family protein [Populus trichocarpa]
6 Hb_012347_010 0.195208899 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
7 Hb_002027_300 0.1977325731 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
8 Hb_005396_040 0.1998577793 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_012366_020 0.201106396 - - unnamed protein product [Vitis vinifera]
10 Hb_009812_020 0.2062249884 - - -
11 Hb_000926_290 0.2126129803 - - conserved hypothetical protein [Ricinus communis]
12 Hb_055335_010 0.213053312 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
13 Hb_000957_040 0.213671208 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
14 Hb_000472_040 0.2161498097 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
15 Hb_001102_230 0.217670261 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
16 Hb_005321_030 0.2192689215 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
17 Hb_000178_110 0.2197233237 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007120_070 0.2204415345 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_124315_040 0.2213229036 - - hypothetical protein 19 [Hevea brasiliensis]
20 Hb_004705_030 0.2213462565 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007336_040 Hb_007336_040 Hb_001001_030 Hb_001001_030 Hb_007336_040--Hb_001001_030 Hb_003687_140 Hb_003687_140 Hb_007336_040--Hb_003687_140 Hb_000699_120 Hb_000699_120 Hb_007336_040--Hb_000699_120 Hb_029584_140 Hb_029584_140 Hb_007336_040--Hb_029584_140 Hb_012347_010 Hb_012347_010 Hb_007336_040--Hb_012347_010 Hb_002027_300 Hb_002027_300 Hb_007336_040--Hb_002027_300 Hb_001102_230 Hb_001102_230 Hb_001001_030--Hb_001102_230 Hb_005321_030 Hb_005321_030 Hb_001001_030--Hb_005321_030 Hb_002471_070 Hb_002471_070 Hb_001001_030--Hb_002471_070 Hb_000107_410 Hb_000107_410 Hb_001001_030--Hb_000107_410 Hb_007044_210 Hb_007044_210 Hb_001001_030--Hb_007044_210 Hb_000926_290 Hb_000926_290 Hb_003687_140--Hb_000926_290 Hb_030765_020 Hb_030765_020 Hb_003687_140--Hb_030765_020 Hb_004607_150 Hb_004607_150 Hb_003687_140--Hb_004607_150 Hb_000699_020 Hb_000699_020 Hb_003687_140--Hb_000699_020 Hb_003687_140--Hb_029584_140 Hb_005031_070 Hb_005031_070 Hb_003687_140--Hb_005031_070 Hb_000178_110 Hb_000178_110 Hb_000699_120--Hb_000178_110 Hb_000077_410 Hb_000077_410 Hb_000699_120--Hb_000077_410 Hb_113951_010 Hb_113951_010 Hb_000699_120--Hb_113951_010 Hb_012725_110 Hb_012725_110 Hb_000699_120--Hb_012725_110 Hb_004705_030 Hb_004705_030 Hb_000699_120--Hb_004705_030 Hb_000836_500 Hb_000836_500 Hb_000699_120--Hb_000836_500 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_003038_180 Hb_003038_180 Hb_029584_140--Hb_003038_180 Hb_012799_060 Hb_012799_060 Hb_029584_140--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_029584_140--Hb_030765_020 Hb_012347_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_012347_010--Hb_000957_040 Hb_010872_060 Hb_010872_060 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_001140_160 Hb_001140_160 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_002027_300--Hb_000957_040 Hb_001315_020 Hb_001315_020 Hb_002027_300--Hb_001315_020 Hb_002027_300--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_002027_300--Hb_006120_200 Hb_002027_300--Hb_010872_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27803 1.34812 0.0512776 0.313736 1.33322 0.539157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3915 2.38076 4.06989 0.753968 0.115741

CAGE analysis