Hb_005321_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig5321: 12780-14426
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24550g
description POPTRDRAFT_559693; hypothetical protein
nr
ID XP_012085323.1
description PREDICTED: myb-related protein Myb4 [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JRM0
description MYB family protein OS=Jatropha curcas GN=JCGZ_17695 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47419: 12800-14388
cDNA
(Sanger)
(ID:Location)		 015_I03.ab1: 13113-14388

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005321_030 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
2 Hb_000260_450 0.1671281032 - - GTP binding protein, putative [Ricinus communis]
3 Hb_001341_130 0.1858766533 - - conserved hypothetical protein [Ricinus communis]
4 Hb_055259_010 0.1864179434 - - -
5 Hb_010710_020 0.1903273583 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
6 Hb_026428_010 0.1908214946 - - copper transport protein ATOX1 [Hevea brasiliensis]
7 Hb_000188_130 0.1946563336 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
8 Hb_001623_240 0.1955048592 - - hypothetical protein VITISV_004933 [Vitis vinifera]
9 Hb_004724_140 0.1968623614 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
10 Hb_000521_150 0.199421826 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
11 Hb_030565_070 0.2003642406 - - -
12 Hb_000926_290 0.2025593152 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007140_020 0.2042856031 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
14 Hb_003687_140 0.205812811 - - BnaCnng65050D [Brassica napus]
15 Hb_012052_060 0.2073895522 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
16 Hb_002235_400 0.2078478469 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
17 Hb_000922_170 0.2091794911 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
18 Hb_029584_140 0.2093400254 - - senescence-associated family protein [Populus trichocarpa]
19 Hb_002529_100 0.2106557479 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
20 Hb_001153_080 0.2106700616 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]

Gene co-expression network

sample Hb_005321_030 Hb_005321_030 Hb_000260_450 Hb_000260_450 Hb_005321_030--Hb_000260_450 Hb_001341_130 Hb_001341_130 Hb_005321_030--Hb_001341_130 Hb_055259_010 Hb_055259_010 Hb_005321_030--Hb_055259_010 Hb_010710_020 Hb_010710_020 Hb_005321_030--Hb_010710_020 Hb_026428_010 Hb_026428_010 Hb_005321_030--Hb_026428_010 Hb_000188_130 Hb_000188_130 Hb_005321_030--Hb_000188_130 Hb_035905_010 Hb_035905_010 Hb_000260_450--Hb_035905_010 Hb_011931_050 Hb_011931_050 Hb_000260_450--Hb_011931_050 Hb_030565_070 Hb_030565_070 Hb_000260_450--Hb_030565_070 Hb_000260_450--Hb_055259_010 Hb_001153_080 Hb_001153_080 Hb_000260_450--Hb_001153_080 Hb_001341_130--Hb_000188_130 Hb_001341_130--Hb_001153_080 Hb_000045_190 Hb_000045_190 Hb_001341_130--Hb_000045_190 Hb_002529_100 Hb_002529_100 Hb_001341_130--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_001341_130--Hb_003581_090 Hb_002759_230 Hb_002759_230 Hb_001341_130--Hb_002759_230 Hb_000206_220 Hb_000206_220 Hb_055259_010--Hb_000206_220 Hb_002805_290 Hb_002805_290 Hb_055259_010--Hb_002805_290 Hb_003106_140 Hb_003106_140 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_005618_040 Hb_005618_040 Hb_055259_010--Hb_005618_040 Hb_001538_100 Hb_001538_100 Hb_010710_020--Hb_001538_100 Hb_003680_070 Hb_003680_070 Hb_010710_020--Hb_003680_070 Hb_010710_020--Hb_001153_080 Hb_000163_200 Hb_000163_200 Hb_010710_020--Hb_000163_200 Hb_000261_460 Hb_000261_460 Hb_010710_020--Hb_000261_460 Hb_010710_020--Hb_030565_070 Hb_000803_050 Hb_000803_050 Hb_026428_010--Hb_000803_050 Hb_001035_040 Hb_001035_040 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_000175_610 Hb_000175_610 Hb_026428_010--Hb_000175_610 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070 Hb_000188_130--Hb_000045_190 Hb_000188_130--Hb_002759_230 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_000188_130--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.4237 11.8636 5.9164 10.68 12.2205 16.1141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.47 62.7537 30.9228 34.4811 0.13731

CAGE analysis