Hb_000260_450

Information

Type -
Description -
Location Contig260: 284750-285540
Sequence    

Annotation

kegg
ID rcu:RCOM_1323410
description GTP binding protein, putative
nr
ID XP_002519979.1
description GTP binding protein, putative [Ricinus communis]
swissprot
ID Q9SSC7
description Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1
trembl
ID B9S1W0
description GTP binding protein, putative OS=Ricinus communis GN=RCOM_1323410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_450 0.0 - - GTP binding protein, putative [Ricinus communis]
2 Hb_005321_030 0.1671281032 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
3 Hb_035905_010 0.2258868156 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
4 Hb_011931_050 0.2347197592 - - fk506-binding protein, putative [Ricinus communis]
5 Hb_030565_070 0.2347974486 - - -
6 Hb_055259_010 0.2379877058 - - -
7 Hb_001153_080 0.2383369544 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
8 Hb_004718_020 0.2387924752 - - Potassium channel KAT3, putative [Ricinus communis]
9 Hb_001623_240 0.2400702803 - - hypothetical protein VITISV_004933 [Vitis vinifera]
10 Hb_010710_020 0.2412332712 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
11 Hb_030565_130 0.2432088955 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
12 Hb_004724_140 0.2468152673 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
13 Hb_000005_030 0.2474648661 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
14 Hb_003142_050 0.2495491636 - - -
15 Hb_000442_090 0.2502902545 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
16 Hb_003680_070 0.2525731466 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
17 Hb_007044_210 0.2533438393 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
18 Hb_000161_050 0.253442167 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001109_120 0.2534704845 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
20 Hb_001341_130 0.2539608223 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000260_450 Hb_000260_450 Hb_005321_030 Hb_005321_030 Hb_000260_450--Hb_005321_030 Hb_035905_010 Hb_035905_010 Hb_000260_450--Hb_035905_010 Hb_011931_050 Hb_011931_050 Hb_000260_450--Hb_011931_050 Hb_030565_070 Hb_030565_070 Hb_000260_450--Hb_030565_070 Hb_055259_010 Hb_055259_010 Hb_000260_450--Hb_055259_010 Hb_001153_080 Hb_001153_080 Hb_000260_450--Hb_001153_080 Hb_001341_130 Hb_001341_130 Hb_005321_030--Hb_001341_130 Hb_005321_030--Hb_055259_010 Hb_010710_020 Hb_010710_020 Hb_005321_030--Hb_010710_020 Hb_026428_010 Hb_026428_010 Hb_005321_030--Hb_026428_010 Hb_000188_130 Hb_000188_130 Hb_005321_030--Hb_000188_130 Hb_004691_040 Hb_004691_040 Hb_035905_010--Hb_004691_040 Hb_003992_120 Hb_003992_120 Hb_035905_010--Hb_003992_120 Hb_004116_110 Hb_004116_110 Hb_035905_010--Hb_004116_110 Hb_001141_400 Hb_001141_400 Hb_035905_010--Hb_001141_400 Hb_000061_350 Hb_000061_350 Hb_035905_010--Hb_000061_350 Hb_070986_010 Hb_070986_010 Hb_011931_050--Hb_070986_010 Hb_000316_110 Hb_000316_110 Hb_011931_050--Hb_000316_110 Hb_000061_330 Hb_000061_330 Hb_011931_050--Hb_000061_330 Hb_001623_240 Hb_001623_240 Hb_011931_050--Hb_001623_240 Hb_000045_190 Hb_000045_190 Hb_011931_050--Hb_000045_190 Hb_000634_050 Hb_000634_050 Hb_011931_050--Hb_000634_050 Hb_000163_200 Hb_000163_200 Hb_030565_070--Hb_000163_200 Hb_030565_070--Hb_010710_020 Hb_000107_370 Hb_000107_370 Hb_030565_070--Hb_000107_370 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_005618_040 Hb_005618_040 Hb_030565_070--Hb_005618_040 Hb_000206_220 Hb_000206_220 Hb_055259_010--Hb_000206_220 Hb_002805_290 Hb_002805_290 Hb_055259_010--Hb_002805_290 Hb_003106_140 Hb_003106_140 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_055259_010--Hb_005618_040 Hb_001153_080--Hb_000045_190 Hb_000161_050 Hb_000161_050 Hb_001153_080--Hb_000161_050 Hb_001153_080--Hb_001341_130 Hb_001153_080--Hb_000634_050 Hb_011609_180 Hb_011609_180 Hb_001153_080--Hb_011609_180 Hb_001153_080--Hb_000188_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19628 0 0.111756 0.619536 0.695708 0.765857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40389 2.62859 0.571614 1.87863 0

CAGE analysis