Hb_011609_180

Information

Type -
Description -
Location Contig11609: 183725-186230
Sequence    

Annotation

kegg
ID cit:102617296
description uncharacterized LOC102617296
nr
ID XP_006482270.1
description PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
swissprot
ID Q552P9
description Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum GN=DDB_G0275933 PE=3 SV=1
trembl
ID A0A061EPI3
description Cytochrome c oxidase biogenesis protein Cmc1-like OS=Theobroma cacao GN=TCM_019491 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04971: 183756-185779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011609_180 0.0 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
2 Hb_000085_200 0.0651630495 - - ATP synthase subunit H protein [Hevea brasiliensis]
3 Hb_000634_050 0.082915265 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
4 Hb_000212_260 0.0853147499 - - acyl-carrier-protein [Triadica sebifera]
5 Hb_007741_050 0.087435479 - - vesicle-associated membrane protein, putative [Ricinus communis]
6 Hb_000144_110 0.0941699518 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
7 Hb_000648_060 0.0977520207 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
8 Hb_000045_190 0.0980001326 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
9 Hb_001153_080 0.0992936692 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
10 Hb_000417_110 0.1002646611 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
11 Hb_000526_150 0.1029740581 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
12 Hb_007021_020 0.1039385706 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
13 Hb_009252_130 0.1049187145 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
14 Hb_001104_120 0.1052296001 - - -
15 Hb_001584_070 0.1053340305 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002282_020 0.1054492169 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
17 Hb_005611_010 0.1061256001 - - PREDICTED: protein prune homolog [Jatropha curcas]
18 Hb_000362_210 0.1063541313 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
19 Hb_002571_020 0.1064699298 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
20 Hb_001427_120 0.1067813477 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_011609_180 Hb_011609_180 Hb_000085_200 Hb_000085_200 Hb_011609_180--Hb_000085_200 Hb_000634_050 Hb_000634_050 Hb_011609_180--Hb_000634_050 Hb_000212_260 Hb_000212_260 Hb_011609_180--Hb_000212_260 Hb_007741_050 Hb_007741_050 Hb_011609_180--Hb_007741_050 Hb_000144_110 Hb_000144_110 Hb_011609_180--Hb_000144_110 Hb_000648_060 Hb_000648_060 Hb_011609_180--Hb_000648_060 Hb_000085_200--Hb_000634_050 Hb_002447_030 Hb_002447_030 Hb_000085_200--Hb_002447_030 Hb_002529_100 Hb_002529_100 Hb_000085_200--Hb_002529_100 Hb_000008_320 Hb_000008_320 Hb_000085_200--Hb_000008_320 Hb_000417_110 Hb_000417_110 Hb_000085_200--Hb_000417_110 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000526_150 Hb_000526_150 Hb_000634_050--Hb_000526_150 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_001257_080 Hb_001257_080 Hb_007741_050--Hb_001257_080 Hb_007101_150 Hb_007101_150 Hb_007741_050--Hb_007101_150 Hb_007741_050--Hb_000798_030 Hb_007479_020 Hb_007479_020 Hb_007741_050--Hb_007479_020 Hb_000970_010 Hb_000970_010 Hb_007741_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_007741_050--Hb_001818_020 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_009252_130 Hb_009252_130 Hb_000144_110--Hb_009252_130 Hb_002918_200 Hb_002918_200 Hb_000648_060--Hb_002918_200 Hb_004108_230 Hb_004108_230 Hb_000648_060--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_000648_060--Hb_003175_040 Hb_003927_130 Hb_003927_130 Hb_000648_060--Hb_003927_130 Hb_001538_110 Hb_001538_110 Hb_000648_060--Hb_001538_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1941 1.89952 6.6074 7.53352 19.3248 21.3286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.2891 52.4735 25.9418 9.00143 1.4118

CAGE analysis