Hb_004881_100

Information

Type -
Description -
Location Contig4881: 103924-110874
Sequence    

Annotation

kegg
ID rcu:RCOM_1643070
description Ribose-phosphate pyrophosphokinase, putative (EC:2.7.6.1)
nr
ID XP_007048859.1
description Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
swissprot
ID Q9XGA1
description Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1
trembl
ID A0A061DLQ7
description Phosphoribosyltransferase family protein isoform 4 OS=Theobroma cacao GN=TCM_001872 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ribose-phosphate pyrophosphokinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45121: 104104-108011 , PASA_asmbl_45122: 110590-110816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_100 0.0 - - Phosphoribosyltransferase family protein isoform 4 [Theobroma cacao]
2 Hb_000512_070 0.2277535809 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
3 Hb_001242_090 0.2381322937 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
4 Hb_004103_030 0.2427183357 - - conserved hypothetical protein [Ricinus communis]
5 Hb_177179_010 0.2588662142 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
6 Hb_002289_130 0.2948693534 transcription factor TF Family: C2H2 arsenite inducuble RNA associated protein aip-1, putative [Ricinus communis]
7 Hb_001506_010 0.3031662849 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
8 Hb_000304_060 0.306171528 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
9 Hb_003688_170 0.3096850469 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
10 Hb_000251_090 0.3130241387 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
11 Hb_032496_010 0.3205250602 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
12 Hb_002513_030 0.3268758197 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
13 Hb_097968_010 0.3276521256 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
14 Hb_001545_210 0.3307628084 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
15 Hb_006268_020 0.3366332006 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
16 Hb_011063_020 0.3368747274 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
17 Hb_002644_030 0.3415541185 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like, partial [Eucalyptus grandis]
18 Hb_012522_010 0.3442627266 - - hypothetical protein VITISV_003261 [Vitis vinifera]
19 Hb_003688_160 0.3450711666 - - Presenilin-like family protein [Populus trichocarpa]
20 Hb_000618_090 0.3464434102 - - -

Gene co-expression network

sample Hb_004881_100 Hb_004881_100 Hb_000512_070 Hb_000512_070 Hb_004881_100--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004881_100--Hb_001242_090 Hb_004103_030 Hb_004103_030 Hb_004881_100--Hb_004103_030 Hb_177179_010 Hb_177179_010 Hb_004881_100--Hb_177179_010 Hb_002289_130 Hb_002289_130 Hb_004881_100--Hb_002289_130 Hb_001506_010 Hb_001506_010 Hb_004881_100--Hb_001506_010 Hb_006268_020 Hb_006268_020 Hb_000512_070--Hb_006268_020 Hb_000512_070--Hb_004103_030 Hb_130194_010 Hb_130194_010 Hb_000512_070--Hb_130194_010 Hb_032496_010 Hb_032496_010 Hb_000512_070--Hb_032496_010 Hb_000251_090 Hb_000251_090 Hb_000512_070--Hb_000251_090 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_004103_030--Hb_001242_090 Hb_000000_100 Hb_000000_100 Hb_004103_030--Hb_000000_100 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_001545_210 Hb_001545_210 Hb_177179_010--Hb_001545_210 Hb_002513_030 Hb_002513_030 Hb_177179_010--Hb_002513_030 Hb_177179_010--Hb_001242_090 Hb_003226_290 Hb_003226_290 Hb_177179_010--Hb_003226_290 Hb_006280_010 Hb_006280_010 Hb_177179_010--Hb_006280_010 Hb_000161_020 Hb_000161_020 Hb_002289_130--Hb_000161_020 Hb_002289_130--Hb_001545_210 Hb_002289_130--Hb_001242_090 Hb_002289_130--Hb_177179_010 Hb_001135_280 Hb_001135_280 Hb_002289_130--Hb_001135_280 Hb_002289_130--Hb_003688_170 Hb_000101_160 Hb_000101_160 Hb_001506_010--Hb_000101_160 Hb_010317_020 Hb_010317_020 Hb_001506_010--Hb_010317_020 Hb_001678_020 Hb_001678_020 Hb_001506_010--Hb_001678_020 Hb_000038_030 Hb_000038_030 Hb_001506_010--Hb_000038_030 Hb_024404_010 Hb_024404_010 Hb_001506_010--Hb_024404_010 Hb_024505_050 Hb_024505_050 Hb_001506_010--Hb_024505_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409295 0.408295 0.940071 0.430917 3.65428 0.441176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 7.70206 4.83087 1.27405

CAGE analysis