Hb_000000_100

Information

Type -
Description -
Location Contig0: 179462-181094
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13260g
description POPTRDRAFT_412783; hypothetical protein
nr
ID XP_002302456.2
description hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
swissprot
ID Q84RR0
description Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1
trembl
ID B9GP09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s13260g PE=4 SV=2
Gene Ontology
ID GO:0003676
description probable e3 ubiquitin-protein ligase ari8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_100 0.0 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
2 Hb_004103_030 0.2383455025 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000304_060 0.24373526 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
4 Hb_001976_080 0.2501954596 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
5 Hb_008494_050 0.2501958866 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
6 Hb_008511_010 0.2554606002 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
7 Hb_000251_090 0.2588808204 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
8 Hb_000512_070 0.2626395145 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
9 Hb_007590_070 0.2684297976 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
10 Hb_052689_010 0.2700301794 - - heat shock cognate protein [Solanum commersonii]
11 Hb_000980_070 0.2701560893 - - PREDICTED: uncharacterized protein LOC103440883 [Malus domestica]
12 Hb_012760_020 0.2762661382 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
13 Hb_089206_010 0.2822591674 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_000432_060 0.2837161311 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000357_120 0.2848584902 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
16 Hb_012522_010 0.2860312329 - - hypothetical protein VITISV_003261 [Vitis vinifera]
17 Hb_004899_060 0.2860985526 - - 46 kDa ketoavyl-ACP synthase [Ricinus communis]
18 Hb_001106_050 0.2879640029 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_055101_010 0.291906408 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_080952_010 0.2963227699 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_100 Hb_000000_100 Hb_004103_030 Hb_004103_030 Hb_000000_100--Hb_004103_030 Hb_000304_060 Hb_000304_060 Hb_000000_100--Hb_000304_060 Hb_001976_080 Hb_001976_080 Hb_000000_100--Hb_001976_080 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_008511_010 Hb_008511_010 Hb_000000_100--Hb_008511_010 Hb_000251_090 Hb_000251_090 Hb_000000_100--Hb_000251_090 Hb_097968_010 Hb_097968_010 Hb_004103_030--Hb_097968_010 Hb_183443_010 Hb_183443_010 Hb_004103_030--Hb_183443_010 Hb_000512_070 Hb_000512_070 Hb_004103_030--Hb_000512_070 Hb_001242_090 Hb_001242_090 Hb_004103_030--Hb_001242_090 Hb_007590_070 Hb_007590_070 Hb_004103_030--Hb_007590_070 Hb_163837_010 Hb_163837_010 Hb_000304_060--Hb_163837_010 Hb_012522_010 Hb_012522_010 Hb_000304_060--Hb_012522_010 Hb_012760_020 Hb_012760_020 Hb_000304_060--Hb_012760_020 Hb_000304_060--Hb_000512_070 Hb_000304_060--Hb_000251_090 Hb_001976_080--Hb_008511_010 Hb_001976_080--Hb_000304_060 Hb_000192_110 Hb_000192_110 Hb_001976_080--Hb_000192_110 Hb_015970_010 Hb_015970_010 Hb_001976_080--Hb_015970_010 Hb_108886_010 Hb_108886_010 Hb_001976_080--Hb_108886_010 Hb_000566_030 Hb_000566_030 Hb_008494_050--Hb_000566_030 Hb_000853_400 Hb_000853_400 Hb_008494_050--Hb_000853_400 Hb_000334_180 Hb_000334_180 Hb_008494_050--Hb_000334_180 Hb_002666_020 Hb_002666_020 Hb_008494_050--Hb_002666_020 Hb_008494_050--Hb_007590_070 Hb_008494_050--Hb_004103_030 Hb_181909_010 Hb_181909_010 Hb_008511_010--Hb_181909_010 Hb_055101_010 Hb_055101_010 Hb_008511_010--Hb_055101_010 Hb_005439_040 Hb_005439_040 Hb_008511_010--Hb_005439_040 Hb_000637_120 Hb_000637_120 Hb_008511_010--Hb_000637_120 Hb_073452_010 Hb_073452_010 Hb_000251_090--Hb_073452_010 Hb_002205_190 Hb_002205_190 Hb_000251_090--Hb_002205_190 Hb_000567_380 Hb_000567_380 Hb_000251_090--Hb_000567_380 Hb_000011_330 Hb_000011_330 Hb_000251_090--Hb_000011_330 Hb_001946_410 Hb_001946_410 Hb_000251_090--Hb_001946_410 Hb_008695_140 Hb_008695_140 Hb_000251_090--Hb_008695_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.427923 0.966321 0.140799 0.251384 0.21385 0.484006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.25386 0.880817 0.147648

CAGE analysis