Hb_001976_080

Information

Type transcription factor
Description TF Family: AP2
Location Contig1976: 88212-92785
Sequence    

Annotation

kegg
ID rcu:RCOM_0021080
description Protein BABY BOOM, putative (EC:1.3.1.74)
nr
ID XP_012081678.1
description PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
swissprot
ID Q52QU2
description AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1
trembl
ID A0A067KD77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18709 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor ail6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001976_080 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
2 Hb_000000_100 0.2501954596 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
3 Hb_008511_010 0.2778911401 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK6 [Jatropha curcas]
4 Hb_000304_060 0.2953828997 transcription factor TF Family: GRAS hypothetical protein POPTR_0010s15360g [Populus trichocarpa]
5 Hb_000192_110 0.2971223505 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
6 Hb_015970_010 0.2992477271 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_108886_010 0.2998736695 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003025_070 0.3026824398 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
9 Hb_003777_010 0.3067325512 - - -
10 Hb_003055_170 0.3130463691 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25 isoform X1 [Jatropha curcas]
11 Hb_001338_060 0.3144037243 - - -
12 Hb_171537_010 0.3182725464 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
13 Hb_001387_030 0.3185514326 transcription factor TF Family: ERF hypothetical protein POPTR_0013s13920g [Populus trichocarpa]
14 Hb_005045_040 0.3224621805 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
15 Hb_005699_080 0.3233833768 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
16 Hb_001462_020 0.3275617901 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_071586_010 0.3277035073 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
18 Hb_074108_010 0.3280459816 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_161072_010 0.3305408035 - - -
20 Hb_007537_010 0.3325208027 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001976_080 Hb_001976_080 Hb_000000_100 Hb_000000_100 Hb_001976_080--Hb_000000_100 Hb_008511_010 Hb_008511_010 Hb_001976_080--Hb_008511_010 Hb_000304_060 Hb_000304_060 Hb_001976_080--Hb_000304_060 Hb_000192_110 Hb_000192_110 Hb_001976_080--Hb_000192_110 Hb_015970_010 Hb_015970_010 Hb_001976_080--Hb_015970_010 Hb_108886_010 Hb_108886_010 Hb_001976_080--Hb_108886_010 Hb_004103_030 Hb_004103_030 Hb_000000_100--Hb_004103_030 Hb_000000_100--Hb_000304_060 Hb_008494_050 Hb_008494_050 Hb_000000_100--Hb_008494_050 Hb_000000_100--Hb_008511_010 Hb_000251_090 Hb_000251_090 Hb_000000_100--Hb_000251_090 Hb_181909_010 Hb_181909_010 Hb_008511_010--Hb_181909_010 Hb_055101_010 Hb_055101_010 Hb_008511_010--Hb_055101_010 Hb_005439_040 Hb_005439_040 Hb_008511_010--Hb_005439_040 Hb_000637_120 Hb_000637_120 Hb_008511_010--Hb_000637_120 Hb_163837_010 Hb_163837_010 Hb_000304_060--Hb_163837_010 Hb_012522_010 Hb_012522_010 Hb_000304_060--Hb_012522_010 Hb_012760_020 Hb_012760_020 Hb_000304_060--Hb_012760_020 Hb_000512_070 Hb_000512_070 Hb_000304_060--Hb_000512_070 Hb_000304_060--Hb_000251_090 Hb_000192_110--Hb_015970_010 Hb_003055_170 Hb_003055_170 Hb_000192_110--Hb_003055_170 Hb_011437_030 Hb_011437_030 Hb_000192_110--Hb_011437_030 Hb_026048_060 Hb_026048_060 Hb_000192_110--Hb_026048_060 Hb_000192_110--Hb_000000_100 Hb_015970_010--Hb_003055_170 Hb_015970_010--Hb_011437_030 Hb_005699_080 Hb_005699_080 Hb_015970_010--Hb_005699_080 Hb_007380_010 Hb_007380_010 Hb_015970_010--Hb_007380_010 Hb_001338_060 Hb_001338_060 Hb_108886_010--Hb_001338_060 Hb_005045_040 Hb_005045_040 Hb_108886_010--Hb_005045_040 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_003777_010 Hb_003777_010 Hb_108886_010--Hb_003777_010 Hb_021419_050 Hb_021419_050 Hb_108886_010--Hb_021419_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258668 1.18687 0 0.0827995 0.077418 0.0748596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.023855 2.15338 0.361709 0.0499587

CAGE analysis