Hb_001338_060

Information

Type -
Description -
Location Contig1338: 94761-100076
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001338_060 0.0 - - -
2 Hb_108886_010 0.0984114493 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005045_040 0.1137964279 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
4 Hb_003777_010 0.2312182991 - - -
5 Hb_001545_030 0.2592712569 - - -
6 Hb_071586_010 0.3031376442 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
7 Hb_001462_020 0.3034352047 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_007537_010 0.3066941429 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000252_030 0.3087952981 - - Heme-binding protein, putative [Ricinus communis]
10 Hb_001976_080 0.3144037243 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
11 Hb_003025_070 0.3171368846 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
12 Hb_001008_040 0.3171772582 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
13 Hb_096671_010 0.3207381601 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_004296_030 0.3211324877 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
15 Hb_000904_100 0.3212750122 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
16 Hb_006478_170 0.3435557444 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
17 Hb_000000_100 0.3547373349 - - hypothetical protein POPTR_0002s13260g [Populus trichocarpa]
18 Hb_000042_140 0.3595419582 - - hypothetical protein POPTR_0001s41640g, partial [Populus trichocarpa]
19 Hb_021419_050 0.360220952 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
20 Hb_038044_020 0.3645268739 - - -

Gene co-expression network

sample Hb_001338_060 Hb_001338_060 Hb_108886_010 Hb_108886_010 Hb_001338_060--Hb_108886_010 Hb_005045_040 Hb_005045_040 Hb_001338_060--Hb_005045_040 Hb_003777_010 Hb_003777_010 Hb_001338_060--Hb_003777_010 Hb_001545_030 Hb_001545_030 Hb_001338_060--Hb_001545_030 Hb_071586_010 Hb_071586_010 Hb_001338_060--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_001338_060--Hb_001462_020 Hb_108886_010--Hb_005045_040 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_108886_010--Hb_003777_010 Hb_021419_050 Hb_021419_050 Hb_108886_010--Hb_021419_050 Hb_005045_040--Hb_003777_010 Hb_005045_040--Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_005045_040--Hb_004296_030 Hb_006478_170 Hb_006478_170 Hb_005045_040--Hb_006478_170 Hb_003777_010--Hb_071586_010 Hb_003777_010--Hb_001462_020 Hb_003777_010--Hb_006478_170 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_001545_030--Hb_004296_030 Hb_014510_010 Hb_014510_010 Hb_001545_030--Hb_014510_010 Hb_000483_110 Hb_000483_110 Hb_001545_030--Hb_000483_110 Hb_001338_050 Hb_001338_050 Hb_001545_030--Hb_001338_050 Hb_071586_010--Hb_001462_020 Hb_071586_010--Hb_096671_010 Hb_000904_100 Hb_000904_100 Hb_071586_010--Hb_000904_100 Hb_001956_030 Hb_001956_030 Hb_071586_010--Hb_001956_030 Hb_089173_010 Hb_089173_010 Hb_071586_010--Hb_089173_010 Hb_001462_020--Hb_096671_010 Hb_001462_020--Hb_000904_100 Hb_001462_020--Hb_001956_030 Hb_001462_020--Hb_089173_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0428489 0 0 0 0.01258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0482343 0.0205384 0

CAGE analysis