Hb_005045_040

Information

Type -
Description -
Location Contig5045: 15597-19230
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04090g
description hypothetical protein
nr
ID XP_006372699.1
description hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FKN0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s04090g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005045_040 0.0 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
2 Hb_001338_060 0.1137964279 - - -
3 Hb_003777_010 0.1636790691 - - -
4 Hb_108886_010 0.1982300326 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001545_030 0.2300105935 - - -
6 Hb_004296_030 0.2575076306 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
7 Hb_006478_170 0.2641603779 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
8 Hb_071586_010 0.2749347675 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
9 Hb_001462_020 0.2755308687 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_096671_010 0.2954494581 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_000904_100 0.2965259678 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
12 Hb_007537_010 0.3155546742 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_014510_010 0.3162965409 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
14 Hb_000220_140 0.322349675 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
15 Hb_001976_080 0.3224621805 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
16 Hb_038044_020 0.3365024141 - - -
17 Hb_122911_020 0.342058712 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_001008_040 0.3578730719 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
19 Hb_003025_070 0.368598134 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
20 Hb_000108_170 0.3707768018 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005045_040 Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_005045_040--Hb_001338_060 Hb_003777_010 Hb_003777_010 Hb_005045_040--Hb_003777_010 Hb_108886_010 Hb_108886_010 Hb_005045_040--Hb_108886_010 Hb_001545_030 Hb_001545_030 Hb_005045_040--Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_005045_040--Hb_004296_030 Hb_006478_170 Hb_006478_170 Hb_005045_040--Hb_006478_170 Hb_001338_060--Hb_108886_010 Hb_001338_060--Hb_003777_010 Hb_001338_060--Hb_001545_030 Hb_071586_010 Hb_071586_010 Hb_001338_060--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_001338_060--Hb_001462_020 Hb_003777_010--Hb_071586_010 Hb_003777_010--Hb_001462_020 Hb_003777_010--Hb_006478_170 Hb_096671_010 Hb_096671_010 Hb_003777_010--Hb_096671_010 Hb_000252_030 Hb_000252_030 Hb_108886_010--Hb_000252_030 Hb_003025_070 Hb_003025_070 Hb_108886_010--Hb_003025_070 Hb_108886_010--Hb_003777_010 Hb_021419_050 Hb_021419_050 Hb_108886_010--Hb_021419_050 Hb_001545_030--Hb_004296_030 Hb_014510_010 Hb_014510_010 Hb_001545_030--Hb_014510_010 Hb_000483_110 Hb_000483_110 Hb_001545_030--Hb_000483_110 Hb_001338_050 Hb_001338_050 Hb_001545_030--Hb_001338_050 Hb_004296_030--Hb_014510_010 Hb_004296_030--Hb_006478_170 Hb_000220_140 Hb_000220_140 Hb_004296_030--Hb_000220_140 Hb_008643_150 Hb_008643_150 Hb_004296_030--Hb_008643_150 Hb_006478_170--Hb_014510_010 Hb_005288_030 Hb_005288_030 Hb_006478_170--Hb_005288_030 Hb_006478_170--Hb_000220_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.183443 0 0 0 0.0219752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.16435 0.108722 0

CAGE analysis