Hb_001545_030

Information

Type -
Description -
Location Contig1545: 46393-52419
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_030 0.0 - - -
2 Hb_004296_030 0.1767841887 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
3 Hb_005045_040 0.2300105935 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
4 Hb_014510_010 0.2349686639 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
5 Hb_001338_060 0.2592712569 - - -
6 Hb_000483_110 0.2800691808 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
7 Hb_001338_050 0.2812100951 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
8 Hb_005841_080 0.3082937875 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
9 Hb_006478_170 0.3154257428 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
10 Hb_000108_170 0.3176742261 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
11 Hb_108886_010 0.3303128478 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003777_010 0.3304440748 - - -
13 Hb_006970_070 0.3324400903 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012760_020 0.3327741517 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
15 Hb_005539_170 0.3377423244 - - PREDICTED: uncharacterized protein LOC101502180 [Cicer arietinum]
16 Hb_038044_020 0.3379518453 - - -
17 Hb_005137_030 0.3469477611 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002774_130 0.3479931136 - - -
19 Hb_122911_020 0.349765714 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_007382_050 0.3549598051 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_030 Hb_001545_030 Hb_004296_030 Hb_004296_030 Hb_001545_030--Hb_004296_030 Hb_005045_040 Hb_005045_040 Hb_001545_030--Hb_005045_040 Hb_014510_010 Hb_014510_010 Hb_001545_030--Hb_014510_010 Hb_001338_060 Hb_001338_060 Hb_001545_030--Hb_001338_060 Hb_000483_110 Hb_000483_110 Hb_001545_030--Hb_000483_110 Hb_001338_050 Hb_001338_050 Hb_001545_030--Hb_001338_050 Hb_004296_030--Hb_014510_010 Hb_006478_170 Hb_006478_170 Hb_004296_030--Hb_006478_170 Hb_004296_030--Hb_005045_040 Hb_000220_140 Hb_000220_140 Hb_004296_030--Hb_000220_140 Hb_008643_150 Hb_008643_150 Hb_004296_030--Hb_008643_150 Hb_005045_040--Hb_001338_060 Hb_003777_010 Hb_003777_010 Hb_005045_040--Hb_003777_010 Hb_108886_010 Hb_108886_010 Hb_005045_040--Hb_108886_010 Hb_005045_040--Hb_006478_170 Hb_014510_010--Hb_006478_170 Hb_000215_340 Hb_000215_340 Hb_014510_010--Hb_000215_340 Hb_005841_080 Hb_005841_080 Hb_014510_010--Hb_005841_080 Hb_014510_010--Hb_001338_050 Hb_001338_060--Hb_108886_010 Hb_001338_060--Hb_003777_010 Hb_071586_010 Hb_071586_010 Hb_001338_060--Hb_071586_010 Hb_001462_020 Hb_001462_020 Hb_001338_060--Hb_001462_020 Hb_011618_040 Hb_011618_040 Hb_000483_110--Hb_011618_040 Hb_058116_010 Hb_058116_010 Hb_000483_110--Hb_058116_010 Hb_002110_260 Hb_002110_260 Hb_000483_110--Hb_002110_260 Hb_000556_110 Hb_000556_110 Hb_000483_110--Hb_000556_110 Hb_000243_110 Hb_000243_110 Hb_000483_110--Hb_000243_110 Hb_096811_010 Hb_096811_010 Hb_000483_110--Hb_096811_010 Hb_001269_040 Hb_001269_040 Hb_001338_050--Hb_001269_040 Hb_025194_010 Hb_025194_010 Hb_001338_050--Hb_025194_010 Hb_004976_060 Hb_004976_060 Hb_001338_050--Hb_004976_060 Hb_005157_010 Hb_005157_010 Hb_001338_050--Hb_005157_010 Hb_001338_050--Hb_005841_080 Hb_089920_010 Hb_089920_010 Hb_001338_050--Hb_089920_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.200833 0 0 0.0225126 0.0423483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0793467 0.122113 0

CAGE analysis