Hb_004296_030

Information

Type -
Description -
Location Contig4296: 30217-31595
Sequence    

Annotation

kegg
ID rcu:RCOM_0413820
description gamma-tubulin complex component, putative
nr
ID XP_012087790.1
description PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
swissprot
ID Q9FG37
description Gamma-tubulin complex component 3 OS=Arabidopsis thaliana GN=GCP3 PE=1 SV=1
trembl
ID A0A067JXC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25566 PE=4 SV=1
Gene Ontology
ID GO:0005815
description gamma-tubulin complex component 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004296_030 0.0 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
2 Hb_014510_010 0.1636672685 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
3 Hb_001545_030 0.1767841887 - - -
4 Hb_006478_170 0.2238522266 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
5 Hb_005045_040 0.2575076306 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
6 Hb_000220_140 0.2612674794 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
7 Hb_008643_150 0.273501196 - - hypothetical protein CISIN_1g0034652mg, partial [Citrus sinensis]
8 Hb_001338_050 0.2859873386 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
9 Hb_000215_340 0.2954976955 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
10 Hb_005841_080 0.2979547902 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
11 Hb_122911_020 0.297955833 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_000021_120 0.3020411899 - - PREDICTED: uncharacterized protein LOC104115996 isoform X1 [Nicotiana tomentosiformis]
13 Hb_001951_030 0.309063769 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
14 Hb_005622_080 0.3092439416 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
15 Hb_004619_010 0.3150235746 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000483_110 0.3157397365 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
17 Hb_001810_010 0.3192731598 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
18 Hb_003777_010 0.3205229877 - - -
19 Hb_001338_060 0.3211324877 - - -
20 Hb_000108_170 0.3234277958 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004296_030 Hb_004296_030 Hb_014510_010 Hb_014510_010 Hb_004296_030--Hb_014510_010 Hb_001545_030 Hb_001545_030 Hb_004296_030--Hb_001545_030 Hb_006478_170 Hb_006478_170 Hb_004296_030--Hb_006478_170 Hb_005045_040 Hb_005045_040 Hb_004296_030--Hb_005045_040 Hb_000220_140 Hb_000220_140 Hb_004296_030--Hb_000220_140 Hb_008643_150 Hb_008643_150 Hb_004296_030--Hb_008643_150 Hb_014510_010--Hb_006478_170 Hb_000215_340 Hb_000215_340 Hb_014510_010--Hb_000215_340 Hb_014510_010--Hb_001545_030 Hb_005841_080 Hb_005841_080 Hb_014510_010--Hb_005841_080 Hb_001338_050 Hb_001338_050 Hb_014510_010--Hb_001338_050 Hb_001545_030--Hb_005045_040 Hb_001338_060 Hb_001338_060 Hb_001545_030--Hb_001338_060 Hb_000483_110 Hb_000483_110 Hb_001545_030--Hb_000483_110 Hb_001545_030--Hb_001338_050 Hb_005288_030 Hb_005288_030 Hb_006478_170--Hb_005288_030 Hb_006478_170--Hb_000220_140 Hb_003777_010 Hb_003777_010 Hb_006478_170--Hb_003777_010 Hb_006478_170--Hb_005045_040 Hb_005045_040--Hb_001338_060 Hb_005045_040--Hb_003777_010 Hb_108886_010 Hb_108886_010 Hb_005045_040--Hb_108886_010 Hb_003747_110 Hb_003747_110 Hb_000220_140--Hb_003747_110 Hb_001649_120 Hb_001649_120 Hb_000220_140--Hb_001649_120 Hb_000220_140--Hb_003777_010 Hb_122911_020 Hb_122911_020 Hb_000220_140--Hb_122911_020 Hb_000905_030 Hb_000905_030 Hb_008643_150--Hb_000905_030 Hb_001168_080 Hb_001168_080 Hb_008643_150--Hb_001168_080 Hb_001073_020 Hb_001073_020 Hb_008643_150--Hb_001073_020 Hb_005622_080 Hb_005622_080 Hb_008643_150--Hb_005622_080 Hb_032582_010 Hb_032582_010 Hb_008643_150--Hb_032582_010 Hb_008616_020 Hb_008616_020 Hb_008643_150--Hb_008616_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.500406 0.0314156 0 0.0210554 0.0369592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.139489 0.288433 0

CAGE analysis