Hb_001649_120

Information

Type -
Description -
Location Contig1649: 162838-163847
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001649_120 0.0 - - -
2 Hb_000111_220 0.2681858372 - - unnamed protein product [Vitis vinifera]
3 Hb_000220_140 0.2816716925 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
4 Hb_004607_100 0.3017193857 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_004460_040 0.304136729 - - -
6 Hb_008173_100 0.3086866361 - - Kiwellin, putative [Ricinus communis]
7 Hb_003747_110 0.3115058374 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase 1 [Jatropha curcas]
8 Hb_000184_080 0.3115587791 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
9 Hb_108802_010 0.3126662716 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
10 Hb_000009_310 0.3129534952 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_005545_090 0.319305159 - - -
12 Hb_000836_590 0.3210526792 - - hypothetical protein JCGZ_14318 [Jatropha curcas]
13 Hb_001300_120 0.3245340223 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
14 Hb_000856_330 0.3285218688 - - PREDICTED: protein QUIRKY isoform X1 [Cicer arietinum]
15 Hb_164162_010 0.3306096004 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
16 Hb_000438_040 0.3344601157 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_019952_010 0.3350119755 - - -
18 Hb_002481_070 0.3372996089 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_000062_010 0.3379337485 - - Alpha-L-fucosidase 2 precursor, putative [Ricinus communis]
20 Hb_000507_010 0.3384682493 - - hypothetical protein POPTR_0007s02420g [Populus trichocarpa]

Gene co-expression network

sample Hb_001649_120 Hb_001649_120 Hb_000111_220 Hb_000111_220 Hb_001649_120--Hb_000111_220 Hb_000220_140 Hb_000220_140 Hb_001649_120--Hb_000220_140 Hb_004607_100 Hb_004607_100 Hb_001649_120--Hb_004607_100 Hb_004460_040 Hb_004460_040 Hb_001649_120--Hb_004460_040 Hb_008173_100 Hb_008173_100 Hb_001649_120--Hb_008173_100 Hb_003747_110 Hb_003747_110 Hb_001649_120--Hb_003747_110 Hb_000836_590 Hb_000836_590 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_000438_040 Hb_000438_040 Hb_000111_220--Hb_000438_040 Hb_006478_170 Hb_006478_170 Hb_000220_140--Hb_006478_170 Hb_000220_140--Hb_003747_110 Hb_004296_030 Hb_004296_030 Hb_000220_140--Hb_004296_030 Hb_003777_010 Hb_003777_010 Hb_000220_140--Hb_003777_010 Hb_122911_020 Hb_122911_020 Hb_000220_140--Hb_122911_020 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_002345_080 Hb_002345_080 Hb_004607_100--Hb_002345_080 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_000752_020 Hb_000752_020 Hb_004460_040--Hb_000752_020 Hb_003207_100 Hb_003207_100 Hb_004460_040--Hb_003207_100 Hb_002876_070 Hb_002876_070 Hb_004460_040--Hb_002876_070 Hb_000283_100 Hb_000283_100 Hb_004460_040--Hb_000283_100 Hb_108802_010 Hb_108802_010 Hb_004460_040--Hb_108802_010 Hb_000086_620 Hb_000086_620 Hb_004460_040--Hb_000086_620 Hb_008173_100--Hb_002345_080 Hb_008173_100--Hb_003228_070 Hb_136850_040 Hb_136850_040 Hb_008173_100--Hb_136850_040 Hb_008173_100--Hb_004607_100 Hb_000173_200 Hb_000173_200 Hb_008173_100--Hb_000173_200 Hb_003799_020 Hb_003799_020 Hb_003747_110--Hb_003799_020 Hb_006788_080 Hb_006788_080 Hb_003747_110--Hb_006788_080 Hb_000042_370 Hb_000042_370 Hb_003747_110--Hb_000042_370 Hb_000302_210 Hb_000302_210 Hb_003747_110--Hb_000302_210 Hb_000985_070 Hb_000985_070 Hb_003747_110--Hb_000985_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.63844 0.876666 0 0.283209 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.390337 0.372812 0

CAGE analysis