Hb_122911_020

Information

Type -
Description -
Location Contig122911: 13240-14631
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122911_020 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_126024_010 0.2802348402 - - PREDICTED: probable aldo-keto reductase 1 [Populus euphratica]
3 Hb_000142_020 0.2809016513 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_004488_010 0.2826872524 - - hypothetical protein CISIN_1g019168mg [Citrus sinensis]
5 Hb_014510_010 0.284033411 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
6 Hb_038758_010 0.2862007229 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_002019_040 0.2884413241 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
8 Hb_006478_170 0.2884914009 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
9 Hb_000220_140 0.289504822 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
10 Hb_002217_440 0.2931791558 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_008248_010 0.2967087903 - - -
12 Hb_185340_020 0.2967655316 - - -
13 Hb_007259_030 0.2967710986 - - -
14 Hb_006011_060 0.2968403071 - - -
15 Hb_003392_020 0.296860715 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
16 Hb_003430_010 0.297129887 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
17 Hb_000123_320 0.297209985 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
18 Hb_006586_020 0.2977010248 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
19 Hb_004296_030 0.297955833 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
20 Hb_101778_020 0.298063956 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_122911_020 Hb_122911_020 Hb_126024_010 Hb_126024_010 Hb_122911_020--Hb_126024_010 Hb_000142_020 Hb_000142_020 Hb_122911_020--Hb_000142_020 Hb_004488_010 Hb_004488_010 Hb_122911_020--Hb_004488_010 Hb_014510_010 Hb_014510_010 Hb_122911_020--Hb_014510_010 Hb_038758_010 Hb_038758_010 Hb_122911_020--Hb_038758_010 Hb_002019_040 Hb_002019_040 Hb_122911_020--Hb_002019_040 Hb_011909_130 Hb_011909_130 Hb_126024_010--Hb_011909_130 Hb_011639_130 Hb_011639_130 Hb_126024_010--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_126024_010--Hb_004829_050 Hb_000484_050 Hb_000484_050 Hb_126024_010--Hb_000484_050 Hb_001403_100 Hb_001403_100 Hb_126024_010--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_126024_010--Hb_001104_260 Hb_000142_020--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000142_020--Hb_002217_440 Hb_000877_090 Hb_000877_090 Hb_000142_020--Hb_000877_090 Hb_000142_020--Hb_004488_010 Hb_000625_110 Hb_000625_110 Hb_000142_020--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_000142_020--Hb_001810_010 Hb_004488_010--Hb_000877_090 Hb_005588_020 Hb_005588_020 Hb_004488_010--Hb_005588_020 Hb_004488_010--Hb_038758_010 Hb_000977_160 Hb_000977_160 Hb_004488_010--Hb_000977_160 Hb_066262_020 Hb_066262_020 Hb_004488_010--Hb_066262_020 Hb_004296_030 Hb_004296_030 Hb_014510_010--Hb_004296_030 Hb_006478_170 Hb_006478_170 Hb_014510_010--Hb_006478_170 Hb_000215_340 Hb_000215_340 Hb_014510_010--Hb_000215_340 Hb_001545_030 Hb_001545_030 Hb_014510_010--Hb_001545_030 Hb_005841_080 Hb_005841_080 Hb_014510_010--Hb_005841_080 Hb_001338_050 Hb_001338_050 Hb_014510_010--Hb_001338_050 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_038758_010--Hb_000625_110 Hb_038758_010--Hb_001810_010 Hb_012055_100 Hb_012055_100 Hb_038758_010--Hb_012055_100 Hb_002025_370 Hb_002025_370 Hb_002019_040--Hb_002025_370 Hb_001477_120 Hb_001477_120 Hb_002019_040--Hb_001477_120 Hb_004940_090 Hb_004940_090 Hb_002019_040--Hb_004940_090 Hb_067034_010 Hb_067034_010 Hb_002019_040--Hb_067034_010 Hb_006353_010 Hb_006353_010 Hb_002019_040--Hb_006353_010 Hb_000284_060 Hb_000284_060 Hb_002019_040--Hb_000284_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550214 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340516 0 0.100357 0.128452 0

CAGE analysis