Hb_000625_110

Information

Type -
Description -
Location Contig625: 89134-89580
Sequence    

Annotation

kegg
ID rcu:RCOM_0870400
description Chaperone protein dnaJ 11, chloroplast precursor, putative
nr
ID XP_012065946.1
description PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
swissprot
ID Q9FYB5
description Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2
trembl
ID A0A067LEG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06545 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chaperone protein dnaj chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_110 0.0 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
2 Hb_002417_030 0.1570141077 - - PREDICTED: purine permease 3-like [Jatropha curcas]
3 Hb_038758_010 0.1863103896 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
4 Hb_000142_020 0.1884599011 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_003100_010 0.2054486773 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
6 Hb_006198_170 0.213465825 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
7 Hb_011689_140 0.2255920082 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
8 Hb_002217_440 0.2268210664 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_000960_070 0.2334601864 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
10 Hb_000111_300 0.2336134522 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
11 Hb_001318_130 0.2393396842 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
12 Hb_000877_090 0.2410539608 - - allergenic-related protein Pt2L4 [Manihot esculenta]
13 Hb_003504_040 0.2483458467 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
14 Hb_012055_100 0.2493002657 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
15 Hb_001810_010 0.250402206 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
16 Hb_000260_320 0.2547633944 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
17 Hb_001486_150 0.255192224 - - -
18 Hb_008195_040 0.2590510218 - - hypothetical protein VITISV_033788 [Vitis vinifera]
19 Hb_008616_060 0.262694605 - - syntaxin, putative [Ricinus communis]
20 Hb_002067_110 0.262876155 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]

Gene co-expression network

sample Hb_000625_110 Hb_000625_110 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_000625_110--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_000625_110--Hb_000142_020 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_012055_100 Hb_012055_100 Hb_002417_030--Hb_012055_100 Hb_002417_030--Hb_006198_170 Hb_002417_030--Hb_038758_010 Hb_000877_090 Hb_000877_090 Hb_002417_030--Hb_000877_090 Hb_002417_030--Hb_000142_020 Hb_038758_010--Hb_000142_020 Hb_038758_010--Hb_000877_090 Hb_002217_440 Hb_002217_440 Hb_038758_010--Hb_002217_440 Hb_001810_010 Hb_001810_010 Hb_038758_010--Hb_001810_010 Hb_038758_010--Hb_012055_100 Hb_000142_020--Hb_002217_440 Hb_000142_020--Hb_000877_090 Hb_004488_010 Hb_004488_010 Hb_000142_020--Hb_004488_010 Hb_000142_020--Hb_001810_010 Hb_003100_010--Hb_000142_020 Hb_003100_010--Hb_038758_010 Hb_008695_030 Hb_008695_030 Hb_003100_010--Hb_008695_030 Hb_008453_070 Hb_008453_070 Hb_003100_010--Hb_008453_070 Hb_002063_030 Hb_002063_030 Hb_003100_010--Hb_002063_030 Hb_006616_050 Hb_006616_050 Hb_006198_170--Hb_006616_050 Hb_000233_060 Hb_000233_060 Hb_006198_170--Hb_000233_060 Hb_006198_170--Hb_002217_440 Hb_066262_020 Hb_066262_020 Hb_006198_170--Hb_066262_020 Hb_004652_050 Hb_004652_050 Hb_006198_170--Hb_004652_050 Hb_066262_010 Hb_066262_010 Hb_006198_170--Hb_066262_010 Hb_000111_300 Hb_000111_300 Hb_011689_140--Hb_000111_300 Hb_011689_140--Hb_002417_030 Hb_011689_140--Hb_038758_010 Hb_011689_140--Hb_000142_020 Hb_005426_010 Hb_005426_010 Hb_011689_140--Hb_005426_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.603083 11.9573 0 0.37445 0.0649399 0.343084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16242 1.53092 0 3.38304 0

CAGE analysis