Hb_008453_070

Information

Type -
Description -
Location Contig8453: 48447-49570
Sequence    

Annotation

kegg
ID vvi:100233027
description PIP2;2; aquaporin PIP2;2
nr
ID ABH09327.1
description putative aquaporin [Vitis vinifera]
swissprot
ID P42767
description Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1
trembl
ID Q0MX13
description Aquaporin PIP22 OS=Vitis vinifera GN=PIP2;2 PE=2 SV=1
Gene Ontology
ID GO:0016020
description aquaporin pip2 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60212: 48411-49536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008453_070 0.0 - - putative aquaporin [Vitis vinifera]
2 Hb_000014_140 0.1742372556 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_001922_160 0.2142783463 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_002411_140 0.2147179557 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
5 Hb_001514_040 0.2159014003 - - l-asparaginase, putative [Ricinus communis]
6 Hb_001250_110 0.2191704515 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
7 Hb_001565_120 0.2407282402 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
8 Hb_000142_020 0.2580994939 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
9 Hb_084611_010 0.2582026278 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
10 Hb_003442_050 0.2591810467 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
11 Hb_003100_010 0.2600838143 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
12 Hb_131956_010 0.2613335632 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
13 Hb_001250_120 0.262909192 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
14 Hb_000849_110 0.2645159332 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
15 Hb_000117_170 0.2727761976 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
16 Hb_048653_020 0.2748786828 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_126907_010 0.2750254673 - - -
18 Hb_013057_030 0.2756459053 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006198_170 0.2771447743 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
20 Hb_008695_030 0.2783726637 - - hypothetical protein JCGZ_12043 [Jatropha curcas]

Gene co-expression network

sample Hb_008453_070 Hb_008453_070 Hb_000014_140 Hb_000014_140 Hb_008453_070--Hb_000014_140 Hb_001922_160 Hb_001922_160 Hb_008453_070--Hb_001922_160 Hb_002411_140 Hb_002411_140 Hb_008453_070--Hb_002411_140 Hb_001514_040 Hb_001514_040 Hb_008453_070--Hb_001514_040 Hb_001250_110 Hb_001250_110 Hb_008453_070--Hb_001250_110 Hb_001565_120 Hb_001565_120 Hb_008453_070--Hb_001565_120 Hb_005389_010 Hb_005389_010 Hb_000014_140--Hb_005389_010 Hb_189237_010 Hb_189237_010 Hb_000014_140--Hb_189237_010 Hb_001250_120 Hb_001250_120 Hb_000014_140--Hb_001250_120 Hb_050495_010 Hb_050495_010 Hb_000014_140--Hb_050495_010 Hb_000014_140--Hb_001250_110 Hb_001922_160--Hb_001514_040 Hb_002760_060 Hb_002760_060 Hb_001922_160--Hb_002760_060 Hb_003893_020 Hb_003893_020 Hb_001922_160--Hb_003893_020 Hb_003442_050 Hb_003442_050 Hb_001922_160--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_001922_160--Hb_013057_030 Hb_001277_150 Hb_001277_150 Hb_001922_160--Hb_001277_150 Hb_004488_010 Hb_004488_010 Hb_002411_140--Hb_004488_010 Hb_000155_100 Hb_000155_100 Hb_002411_140--Hb_000155_100 Hb_002411_140--Hb_001514_040 Hb_002411_140--Hb_000014_140 Hb_000359_110 Hb_000359_110 Hb_002411_140--Hb_000359_110 Hb_001514_040--Hb_002760_060 Hb_001514_040--Hb_003442_050 Hb_001514_040--Hb_013057_030 Hb_048653_040 Hb_048653_040 Hb_001514_040--Hb_048653_040 Hb_033153_010 Hb_033153_010 Hb_001514_040--Hb_033153_010 Hb_001250_110--Hb_001250_120 Hb_000849_110 Hb_000849_110 Hb_001250_110--Hb_000849_110 Hb_084611_010 Hb_084611_010 Hb_001250_110--Hb_084611_010 Hb_000117_170 Hb_000117_170 Hb_001250_110--Hb_000117_170 Hb_126907_010 Hb_126907_010 Hb_001250_110--Hb_126907_010 Hb_090459_010 Hb_090459_010 Hb_001565_120--Hb_090459_010 Hb_127819_010 Hb_127819_010 Hb_001565_120--Hb_127819_010 Hb_116685_010 Hb_116685_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_000960_010 Hb_000960_010 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16828 67.2616 0 0.621702 1.17332 8.6346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94424 0.717627 0.321698 8.25732 0.356723

CAGE analysis