Hb_001250_110

Information

Type transcription factor
Description TF Family: HB
Location Contig1250: 104218-106283
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05340g
description hypothetical protein
nr
ID XP_006378227.1
description hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
swissprot
ID O04134
description Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1
trembl
ID U5G0X3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s05340g PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07643: 105842-122902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_110 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
2 Hb_001250_120 0.1767543955 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
3 Hb_008453_070 0.2191704515 - - putative aquaporin [Vitis vinifera]
4 Hb_000849_110 0.2251056519 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_084611_010 0.2310679428 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
6 Hb_000117_170 0.2311278954 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
7 Hb_126907_010 0.2404826733 - - -
8 Hb_000281_170 0.2422629868 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_000014_140 0.2441450956 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_031862_260 0.2487500759 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001338_050 0.2527182676 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
12 Hb_057217_010 0.2591736982 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
13 Hb_046117_040 0.2599547972 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
14 Hb_003175_020 0.2603993911 - - homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_002774_130 0.2617234711 - - -
16 Hb_007144_010 0.2621630985 - - -
17 Hb_005389_010 0.2676737892 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
18 Hb_030399_010 0.2698055197 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
19 Hb_001565_120 0.2749144091 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
20 Hb_012760_180 0.2773790219 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001250_110 Hb_001250_110 Hb_001250_120 Hb_001250_120 Hb_001250_110--Hb_001250_120 Hb_008453_070 Hb_008453_070 Hb_001250_110--Hb_008453_070 Hb_000849_110 Hb_000849_110 Hb_001250_110--Hb_000849_110 Hb_084611_010 Hb_084611_010 Hb_001250_110--Hb_084611_010 Hb_000117_170 Hb_000117_170 Hb_001250_110--Hb_000117_170 Hb_126907_010 Hb_126907_010 Hb_001250_110--Hb_126907_010 Hb_054649_020 Hb_054649_020 Hb_001250_120--Hb_054649_020 Hb_000014_140 Hb_000014_140 Hb_001250_120--Hb_000014_140 Hb_001565_120 Hb_001565_120 Hb_001250_120--Hb_001565_120 Hb_000813_080 Hb_000813_080 Hb_001250_120--Hb_000813_080 Hb_167316_010 Hb_167316_010 Hb_001250_120--Hb_167316_010 Hb_008453_070--Hb_000014_140 Hb_001922_160 Hb_001922_160 Hb_008453_070--Hb_001922_160 Hb_002411_140 Hb_002411_140 Hb_008453_070--Hb_002411_140 Hb_001514_040 Hb_001514_040 Hb_008453_070--Hb_001514_040 Hb_008453_070--Hb_001565_120 Hb_000849_110--Hb_000117_170 Hb_000849_110--Hb_084611_010 Hb_000281_170 Hb_000281_170 Hb_000849_110--Hb_000281_170 Hb_000849_110--Hb_126907_010 Hb_002774_130 Hb_002774_130 Hb_000849_110--Hb_002774_130 Hb_046117_040 Hb_046117_040 Hb_000849_110--Hb_046117_040 Hb_084611_010--Hb_126907_010 Hb_084611_010--Hb_000117_170 Hb_084611_010--Hb_000281_170 Hb_084611_010--Hb_046117_040 Hb_084611_010--Hb_002774_130 Hb_000117_170--Hb_000281_170 Hb_000117_170--Hb_126907_010 Hb_000117_170--Hb_046117_040 Hb_000117_170--Hb_002774_130 Hb_126907_010--Hb_000281_170 Hb_126907_010--Hb_046117_040 Hb_150998_010 Hb_150998_010 Hb_126907_010--Hb_150998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05851 9.02792 0 0 0.2387 1.27449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.82373 0

CAGE analysis