Hb_000281_170

Information

Type -
Description -
Location Contig281: 208460-210836
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0016787
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_170 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_046117_040 0.0428456437 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
3 Hb_000117_170 0.0492631093 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
4 Hb_002774_130 0.0603241894 - - -
5 Hb_000849_110 0.0757098801 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
6 Hb_126907_010 0.088949815 - - -
7 Hb_084611_010 0.1101906122 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
8 Hb_150998_010 0.1475582084 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_006216_010 0.162573676 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
10 Hb_000862_020 0.2099266884 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
11 Hb_003851_050 0.2200901583 - - oligopeptide transporter, putative [Ricinus communis]
12 Hb_172632_020 0.236760838 - - -
13 Hb_001687_050 0.2397903351 - - -
14 Hb_001250_110 0.2422629868 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
15 Hb_057217_010 0.2600005561 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
16 Hb_000825_040 0.2628721765 - - catalytic, putative [Ricinus communis]
17 Hb_188168_010 0.2665640124 - - Arylacetamide deacetylase, putative [Ricinus communis]
18 Hb_001136_140 0.2679265245 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
19 Hb_004944_030 0.2679495802 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_187024_020 0.2679990669 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]

Gene co-expression network

sample Hb_000281_170 Hb_000281_170 Hb_046117_040 Hb_046117_040 Hb_000281_170--Hb_046117_040 Hb_000117_170 Hb_000117_170 Hb_000281_170--Hb_000117_170 Hb_002774_130 Hb_002774_130 Hb_000281_170--Hb_002774_130 Hb_000849_110 Hb_000849_110 Hb_000281_170--Hb_000849_110 Hb_126907_010 Hb_126907_010 Hb_000281_170--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_000281_170--Hb_084611_010 Hb_046117_040--Hb_002774_130 Hb_046117_040--Hb_000117_170 Hb_046117_040--Hb_126907_010 Hb_150998_010 Hb_150998_010 Hb_046117_040--Hb_150998_010 Hb_046117_040--Hb_000849_110 Hb_000117_170--Hb_126907_010 Hb_000117_170--Hb_000849_110 Hb_000117_170--Hb_084611_010 Hb_000117_170--Hb_002774_130 Hb_002774_130--Hb_000849_110 Hb_002774_130--Hb_126907_010 Hb_002774_130--Hb_084611_010 Hb_000849_110--Hb_084611_010 Hb_000849_110--Hb_126907_010 Hb_126907_010--Hb_084611_010 Hb_126907_010--Hb_150998_010 Hb_084611_010--Hb_046117_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0358262 0 0 0 0.00759968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0123418 0

CAGE analysis