Hb_000117_170

Information

Type -
Description -
Location Contig117: 245959-246832
Sequence    

Annotation

kegg
ID vvi:100854636
description uncharacterized LOC100854636
nr
ID XP_009591764.1
description PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_170 0.0 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
2 Hb_000281_170 0.0492631093 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_126907_010 0.0505920728 - - -
4 Hb_000849_110 0.0509487261 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
5 Hb_084611_010 0.0612229604 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
6 Hb_046117_040 0.0824457678 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
7 Hb_002774_130 0.1074443292 - - -
8 Hb_150998_010 0.1609203196 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_006216_010 0.1741100743 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
10 Hb_003851_050 0.2246772695 - - oligopeptide transporter, putative [Ricinus communis]
11 Hb_001250_110 0.2311278954 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
12 Hb_172632_020 0.2353012088 - - -
13 Hb_000825_040 0.2405971433 - - catalytic, putative [Ricinus communis]
14 Hb_001218_080 0.2445459805 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_000862_020 0.2450714281 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
16 Hb_057217_010 0.2498178894 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
17 Hb_005389_010 0.2525369286 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
18 Hb_008453_070 0.2727761976 - - putative aquaporin [Vitis vinifera]
19 Hb_007259_030 0.272841927 - - -
20 Hb_185340_020 0.2728508894 - - -

Gene co-expression network

sample Hb_000117_170 Hb_000117_170 Hb_000281_170 Hb_000281_170 Hb_000117_170--Hb_000281_170 Hb_126907_010 Hb_126907_010 Hb_000117_170--Hb_126907_010 Hb_000849_110 Hb_000849_110 Hb_000117_170--Hb_000849_110 Hb_084611_010 Hb_084611_010 Hb_000117_170--Hb_084611_010 Hb_046117_040 Hb_046117_040 Hb_000117_170--Hb_046117_040 Hb_002774_130 Hb_002774_130 Hb_000117_170--Hb_002774_130 Hb_000281_170--Hb_046117_040 Hb_000281_170--Hb_002774_130 Hb_000281_170--Hb_000849_110 Hb_000281_170--Hb_126907_010 Hb_000281_170--Hb_084611_010 Hb_126907_010--Hb_084611_010 Hb_126907_010--Hb_000849_110 Hb_126907_010--Hb_046117_040 Hb_150998_010 Hb_150998_010 Hb_126907_010--Hb_150998_010 Hb_000849_110--Hb_084611_010 Hb_000849_110--Hb_002774_130 Hb_000849_110--Hb_046117_040 Hb_084611_010--Hb_046117_040 Hb_084611_010--Hb_002774_130 Hb_046117_040--Hb_002774_130 Hb_046117_040--Hb_150998_010 Hb_002774_130--Hb_126907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.256624 0 0 0 0.0529231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0657773 0

CAGE analysis