Hb_150998_010

Information

Type -
Description -
Location Contig150998: 15-2961
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_150998_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_006216_010 0.0157592648 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
3 Hb_046117_040 0.1130274087 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
4 Hb_000862_020 0.1237864642 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
5 Hb_126907_010 0.1431492897 - - -
6 Hb_007194_020 0.1452452902 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
7 Hb_000281_170 0.1475582084 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_000117_170 0.1609203196 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
9 Hb_058148_010 0.1708727678 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_002774_130 0.1724508558 - - -
11 Hb_084611_010 0.192767586 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
12 Hb_000849_110 0.2092102453 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
13 Hb_004361_030 0.2143972344 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
14 Hb_003185_060 0.215653258 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
15 Hb_172632_020 0.2190693289 - - -
16 Hb_063472_010 0.2196983483 - - hypothetical protein [Pseudomonas tolaasii]
17 Hb_057217_010 0.2489970356 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
18 Hb_045527_010 0.2645973647 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
19 Hb_001687_050 0.2670459551 - - -
20 Hb_007163_140 0.282185697 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]

Gene co-expression network

sample Hb_150998_010 Hb_150998_010 Hb_006216_010 Hb_006216_010 Hb_150998_010--Hb_006216_010 Hb_046117_040 Hb_046117_040 Hb_150998_010--Hb_046117_040 Hb_000862_020 Hb_000862_020 Hb_150998_010--Hb_000862_020 Hb_126907_010 Hb_126907_010 Hb_150998_010--Hb_126907_010 Hb_007194_020 Hb_007194_020 Hb_150998_010--Hb_007194_020 Hb_000281_170 Hb_000281_170 Hb_150998_010--Hb_000281_170 Hb_006216_010--Hb_000862_020 Hb_006216_010--Hb_046117_040 Hb_006216_010--Hb_007194_020 Hb_006216_010--Hb_126907_010 Hb_058148_010 Hb_058148_010 Hb_006216_010--Hb_058148_010 Hb_046117_040--Hb_000281_170 Hb_002774_130 Hb_002774_130 Hb_046117_040--Hb_002774_130 Hb_000117_170 Hb_000117_170 Hb_046117_040--Hb_000117_170 Hb_046117_040--Hb_126907_010 Hb_000849_110 Hb_000849_110 Hb_046117_040--Hb_000849_110 Hb_000862_020--Hb_007194_020 Hb_000862_020--Hb_058148_010 Hb_000862_020--Hb_046117_040 Hb_010810_090 Hb_010810_090 Hb_000862_020--Hb_010810_090 Hb_084611_010 Hb_084611_010 Hb_126907_010--Hb_084611_010 Hb_126907_010--Hb_000117_170 Hb_126907_010--Hb_000281_170 Hb_126907_010--Hb_000849_110 Hb_007194_020--Hb_058148_010 Hb_063472_010 Hb_063472_010 Hb_007194_020--Hb_063472_010 Hb_007194_020--Hb_010810_090 Hb_000281_170--Hb_000117_170 Hb_000281_170--Hb_002774_130 Hb_000281_170--Hb_000849_110 Hb_000281_170--Hb_084611_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.014145 0 0 0 0.00750153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00609056 0

CAGE analysis