Hb_000849_110

Information

Type -
Description -
Location Contig849: 134650-136682
Sequence    

Annotation

kegg
ID rcu:RCOM_1318880
description hypothetical protein
nr
ID XP_011101607.1
description PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 017_N17r.ab1: 137130-144008

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000849_110 0.0 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
2 Hb_000117_170 0.0509487261 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
3 Hb_084611_010 0.0748333957 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
4 Hb_000281_170 0.0757098801 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_126907_010 0.0937782009 - - -
6 Hb_002774_130 0.1156889648 - - -
7 Hb_046117_040 0.1178755803 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
8 Hb_003851_050 0.1837498807 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_150998_010 0.2092102453 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_000825_040 0.2205975837 - - catalytic, putative [Ricinus communis]
11 Hb_006216_010 0.22267456 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
12 Hb_001250_110 0.2251056519 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
13 Hb_185340_020 0.2313638297 - - -
14 Hb_008248_010 0.2313678365 - - -
15 Hb_007259_030 0.2313683725 - - -
16 Hb_006011_060 0.2316229095 - - -
17 Hb_003392_020 0.2316570433 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
18 Hb_003430_010 0.2320820452 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
19 Hb_000123_320 0.2322038085 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
20 Hb_006586_020 0.2329305355 - - hypothetical protein [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000849_110 Hb_000849_110 Hb_000117_170 Hb_000117_170 Hb_000849_110--Hb_000117_170 Hb_084611_010 Hb_084611_010 Hb_000849_110--Hb_084611_010 Hb_000281_170 Hb_000281_170 Hb_000849_110--Hb_000281_170 Hb_126907_010 Hb_126907_010 Hb_000849_110--Hb_126907_010 Hb_002774_130 Hb_002774_130 Hb_000849_110--Hb_002774_130 Hb_046117_040 Hb_046117_040 Hb_000849_110--Hb_046117_040 Hb_000117_170--Hb_000281_170 Hb_000117_170--Hb_126907_010 Hb_000117_170--Hb_084611_010 Hb_000117_170--Hb_046117_040 Hb_000117_170--Hb_002774_130 Hb_084611_010--Hb_126907_010 Hb_084611_010--Hb_000281_170 Hb_084611_010--Hb_046117_040 Hb_084611_010--Hb_002774_130 Hb_000281_170--Hb_046117_040 Hb_000281_170--Hb_002774_130 Hb_000281_170--Hb_126907_010 Hb_126907_010--Hb_046117_040 Hb_150998_010 Hb_150998_010 Hb_126907_010--Hb_150998_010 Hb_002774_130--Hb_046117_040 Hb_002774_130--Hb_126907_010 Hb_046117_040--Hb_150998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.230195 0 0 0 0.0326949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.05455 0

CAGE analysis