Hb_063472_010

Information

Type -
Description -
Location Contig63472: 24-826
Sequence    

Annotation

kegg
ID mdm:103446519
description uncharacterized LOC103446519
nr
ID WP_016971917.1
description hypothetical protein [Pseudomonas tolaasii]
swissprot
ID -
description -
trembl
ID M1E0L9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400047000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063472_010 0.0 - - hypothetical protein [Pseudomonas tolaasii]
2 Hb_045527_010 0.0486151537 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_058148_010 0.0836644311 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_007194_020 0.1263010121 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
5 Hb_003185_060 0.1495048726 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
6 Hb_006216_010 0.2052290103 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
7 Hb_010810_090 0.21475126 - - -
8 Hb_000862_020 0.2195365513 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
9 Hb_150998_010 0.2196983483 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_004361_030 0.2466642191 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
11 Hb_027337_070 0.2572086622 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
12 Hb_000580_040 0.2664196961 - - -
13 Hb_173423_010 0.2850920167 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000407_060 0.300296237 - - -
15 Hb_046117_040 0.3263322227 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
16 Hb_012815_020 0.3370436814 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_007139_010 0.3370471082 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
18 Hb_019859_030 0.3370488465 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
19 Hb_124976_010 0.3371603248 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_000078_040 0.3372483817 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_063472_010 Hb_063472_010 Hb_045527_010 Hb_045527_010 Hb_063472_010--Hb_045527_010 Hb_058148_010 Hb_058148_010 Hb_063472_010--Hb_058148_010 Hb_007194_020 Hb_007194_020 Hb_063472_010--Hb_007194_020 Hb_003185_060 Hb_003185_060 Hb_063472_010--Hb_003185_060 Hb_006216_010 Hb_006216_010 Hb_063472_010--Hb_006216_010 Hb_010810_090 Hb_010810_090 Hb_063472_010--Hb_010810_090 Hb_045527_010--Hb_058148_010 Hb_045527_010--Hb_003185_060 Hb_045527_010--Hb_007194_020 Hb_000580_040 Hb_000580_040 Hb_045527_010--Hb_000580_040 Hb_045527_010--Hb_010810_090 Hb_058148_010--Hb_007194_020 Hb_000862_020 Hb_000862_020 Hb_058148_010--Hb_000862_020 Hb_058148_010--Hb_006216_010 Hb_058148_010--Hb_010810_090 Hb_007194_020--Hb_000862_020 Hb_007194_020--Hb_006216_010 Hb_150998_010 Hb_150998_010 Hb_007194_020--Hb_150998_010 Hb_007194_020--Hb_010810_090 Hb_004361_030 Hb_004361_030 Hb_003185_060--Hb_004361_030 Hb_027337_070 Hb_027337_070 Hb_003185_060--Hb_027337_070 Hb_003185_060--Hb_058148_010 Hb_003185_060--Hb_006216_010 Hb_006216_010--Hb_150998_010 Hb_006216_010--Hb_000862_020 Hb_046117_040 Hb_046117_040 Hb_006216_010--Hb_046117_040 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010 Hb_010810_090--Hb_000862_020 Hb_001410_100 Hb_001410_100 Hb_010810_090--Hb_001410_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0362954 0 0 0 0.0634072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0264194 0

CAGE analysis