Hb_004361_030

Information

Type -
Description -
Location Contig4361: 41773-48208
Sequence    

Annotation

kegg
ID sot:102597679
description uncharacterized LOC102597679
nr
ID XP_009792327.1
description PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID K4AXD2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g073870.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004361_030 0.0 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
2 Hb_027337_070 0.1460144845 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
3 Hb_003185_060 0.154152047 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
4 Hb_172632_020 0.1951687642 - - -
5 Hb_006216_010 0.2059103463 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
6 Hb_057217_010 0.211970358 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
7 Hb_150998_010 0.2143972344 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_000407_060 0.2260883831 - - -
9 Hb_000243_100 0.2451769209 - - Purple acid phosphatase precursor, putative [Ricinus communis]
10 Hb_004162_110 0.2451797029 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
11 Hb_002800_040 0.2452154616 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001854_010 0.2453843189 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_126907_010 0.2457561991 - - -
14 Hb_063472_010 0.2466642191 - - hypothetical protein [Pseudomonas tolaasii]
15 Hb_011362_030 0.2517778956 - - polyprotein [Oryza australiensis]
16 Hb_012733_080 0.25391149 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_006183_010 0.2541268558 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_080147_010 0.2544373208 - - -
19 Hb_058148_010 0.2619491625 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_002003_110 0.2626726236 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]

Gene co-expression network

sample Hb_004361_030 Hb_004361_030 Hb_027337_070 Hb_027337_070 Hb_004361_030--Hb_027337_070 Hb_003185_060 Hb_003185_060 Hb_004361_030--Hb_003185_060 Hb_172632_020 Hb_172632_020 Hb_004361_030--Hb_172632_020 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_057217_010 Hb_057217_010 Hb_004361_030--Hb_057217_010 Hb_150998_010 Hb_150998_010 Hb_004361_030--Hb_150998_010 Hb_000407_060 Hb_000407_060 Hb_027337_070--Hb_000407_060 Hb_027337_070--Hb_003185_060 Hb_002003_110 Hb_002003_110 Hb_027337_070--Hb_002003_110 Hb_000580_040 Hb_000580_040 Hb_027337_070--Hb_000580_040 Hb_045527_010 Hb_045527_010 Hb_027337_070--Hb_045527_010 Hb_063472_010 Hb_063472_010 Hb_003185_060--Hb_063472_010 Hb_003185_060--Hb_045527_010 Hb_058148_010 Hb_058148_010 Hb_003185_060--Hb_058148_010 Hb_003185_060--Hb_006216_010 Hb_002367_120 Hb_002367_120 Hb_172632_020--Hb_002367_120 Hb_172632_020--Hb_057217_010 Hb_172632_020--Hb_000407_060 Hb_001218_080 Hb_001218_080 Hb_172632_020--Hb_001218_080 Hb_172632_020--Hb_150998_010 Hb_006216_010--Hb_150998_010 Hb_000862_020 Hb_000862_020 Hb_006216_010--Hb_000862_020 Hb_046117_040 Hb_046117_040 Hb_006216_010--Hb_046117_040 Hb_007194_020 Hb_007194_020 Hb_006216_010--Hb_007194_020 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010 Hb_006216_010--Hb_058148_010 Hb_057217_010--Hb_001218_080 Hb_057217_010--Hb_002367_120 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_057217_010--Hb_126907_010 Hb_150998_010--Hb_046117_040 Hb_150998_010--Hb_000862_020 Hb_150998_010--Hb_126907_010 Hb_150998_010--Hb_007194_020 Hb_000281_170 Hb_000281_170 Hb_150998_010--Hb_000281_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.19147 0.0117904 0 0 0.150363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0322495 0

CAGE analysis