Hb_001218_080

Information

Type -
Description -
Location Contig1218: 102254-104872
Sequence    

Annotation

kegg
ID cit:102624588
description probable LRR receptor-like serine/threonine-protein kinase At4g08850-like
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at4g08850-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_080 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_156850_110 0.1788723826 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
3 Hb_000684_170 0.1917362446 - - -
4 Hb_001501_050 0.1974173242 - - Wall associated kinase-like 6, putative [Theobroma cacao]
5 Hb_172632_020 0.2120882659 - - -
6 Hb_000270_850 0.2153115412 - - conserved hypothetical protein [Ricinus communis]
7 Hb_084611_010 0.2196591499 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
8 Hb_000890_190 0.223152656 - - glutaredoxin, grx, putative [Ricinus communis]
9 Hb_003683_090 0.2258412152 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_057217_010 0.2267495041 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
11 Hb_000510_350 0.2325859565 - - Putative polyprotein [Oryza sativa Japonica Group]
12 Hb_000849_110 0.2342316383 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
13 Hb_000699_200 0.2366414979 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
14 Hb_000473_010 0.2369043784 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
15 Hb_003442_050 0.2391512859 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_168039_020 0.241550317 - - -
17 Hb_126907_010 0.2434863092 - - -
18 Hb_002193_050 0.2439830994 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
19 Hb_000117_170 0.2445459805 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
20 Hb_006124_040 0.2504816958 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001218_080 Hb_001218_080 Hb_156850_110 Hb_156850_110 Hb_001218_080--Hb_156850_110 Hb_000684_170 Hb_000684_170 Hb_001218_080--Hb_000684_170 Hb_001501_050 Hb_001501_050 Hb_001218_080--Hb_001501_050 Hb_172632_020 Hb_172632_020 Hb_001218_080--Hb_172632_020 Hb_000270_850 Hb_000270_850 Hb_001218_080--Hb_000270_850 Hb_084611_010 Hb_084611_010 Hb_001218_080--Hb_084611_010 Hb_156850_110--Hb_000270_850 Hb_138628_010 Hb_138628_010 Hb_156850_110--Hb_138628_010 Hb_002205_260 Hb_002205_260 Hb_156850_110--Hb_002205_260 Hb_089140_020 Hb_089140_020 Hb_156850_110--Hb_089140_020 Hb_189242_010 Hb_189242_010 Hb_156850_110--Hb_189242_010 Hb_000684_170--Hb_001501_050 Hb_113388_010 Hb_113388_010 Hb_000684_170--Hb_113388_010 Hb_000896_140 Hb_000896_140 Hb_000684_170--Hb_000896_140 Hb_007040_030 Hb_007040_030 Hb_000684_170--Hb_007040_030 Hb_000926_170 Hb_000926_170 Hb_000684_170--Hb_000926_170 Hb_001501_050--Hb_156850_110 Hb_007292_030 Hb_007292_030 Hb_001501_050--Hb_007292_030 Hb_001501_050--Hb_113388_010 Hb_003849_230 Hb_003849_230 Hb_001501_050--Hb_003849_230 Hb_002367_120 Hb_002367_120 Hb_172632_020--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_172632_020--Hb_057217_010 Hb_000407_060 Hb_000407_060 Hb_172632_020--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_172632_020--Hb_004361_030 Hb_150998_010 Hb_150998_010 Hb_172632_020--Hb_150998_010 Hb_000270_850--Hb_138628_010 Hb_007441_060 Hb_007441_060 Hb_000270_850--Hb_007441_060 Hb_116635_010 Hb_116635_010 Hb_000270_850--Hb_116635_010 Hb_006615_040 Hb_006615_040 Hb_000270_850--Hb_006615_040 Hb_126907_010 Hb_126907_010 Hb_084611_010--Hb_126907_010 Hb_000117_170 Hb_000117_170 Hb_084611_010--Hb_000117_170 Hb_000849_110 Hb_000849_110 Hb_084611_010--Hb_000849_110 Hb_000281_170 Hb_000281_170 Hb_084611_010--Hb_000281_170 Hb_046117_040 Hb_046117_040 Hb_084611_010--Hb_046117_040 Hb_002774_130 Hb_002774_130 Hb_084611_010--Hb_002774_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0783817 0.00807187 0 0 0.00996355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00734397 0

CAGE analysis