Hb_007040_030

Information

Type -
Description -
Location Contig7040: 36760-40607
Sequence    

Annotation

kegg
ID mdm:103415345
description uncharacterized LOC103415345
nr
ID XP_008351907.1
description PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
swissprot
ID -
description -
trembl
ID J7G2Z7
description Non-ltr retroelement reverse transcriptase OS=Rosa rugosa PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007040_030 0.0 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
2 Hb_000896_140 0.0006134246 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
3 Hb_000926_170 0.0065713378 - - conserved hypothetical protein [Ricinus communis]
4 Hb_119789_010 0.022277981 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
5 Hb_156055_020 0.0311692648 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004899_160 0.0389065724 - - -
7 Hb_000002_130 0.0495413817 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
8 Hb_021409_060 0.0597943184 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
9 Hb_168436_010 0.0644994456 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
10 Hb_002127_010 0.0730077559 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
11 Hb_110562_020 0.078877202 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
12 Hb_001268_360 0.0821102551 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
13 Hb_010896_010 0.0891501558 - - -
14 Hb_000172_730 0.0945512697 - - PREDICTED: cytochrome P450 CYP736A12-like [Nicotiana sylvestris]
15 Hb_110048_010 0.095045484 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
16 Hb_067197_020 0.100192427 - - -
17 Hb_005843_070 0.1150203597 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
18 Hb_081445_010 0.1201204808 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
19 Hb_101733_020 0.1207195019 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
20 Hb_030469_010 0.1209165699 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]

Gene co-expression network

sample Hb_007040_030 Hb_007040_030 Hb_000896_140 Hb_000896_140 Hb_007040_030--Hb_000896_140 Hb_000926_170 Hb_000926_170 Hb_007040_030--Hb_000926_170 Hb_119789_010 Hb_119789_010 Hb_007040_030--Hb_119789_010 Hb_156055_020 Hb_156055_020 Hb_007040_030--Hb_156055_020 Hb_004899_160 Hb_004899_160 Hb_007040_030--Hb_004899_160 Hb_000002_130 Hb_000002_130 Hb_007040_030--Hb_000002_130 Hb_000896_140--Hb_000926_170 Hb_000896_140--Hb_119789_010 Hb_000896_140--Hb_156055_020 Hb_000896_140--Hb_004899_160 Hb_000896_140--Hb_000002_130 Hb_000926_170--Hb_119789_010 Hb_000926_170--Hb_156055_020 Hb_000926_170--Hb_000002_130 Hb_000926_170--Hb_004899_160 Hb_119789_010--Hb_156055_020 Hb_119789_010--Hb_004899_160 Hb_021409_060 Hb_021409_060 Hb_119789_010--Hb_021409_060 Hb_156055_020--Hb_004899_160 Hb_156055_020--Hb_021409_060 Hb_168436_010 Hb_168436_010 Hb_156055_020--Hb_168436_010 Hb_004899_160--Hb_021409_060 Hb_004899_160--Hb_168436_010 Hb_002127_010 Hb_002127_010 Hb_004899_160--Hb_002127_010 Hb_110562_020 Hb_110562_020 Hb_000002_130--Hb_110562_020 Hb_000172_730 Hb_000172_730 Hb_000002_130--Hb_000172_730 Hb_000002_130--Hb_119789_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133214 0.0158139 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis