Hb_172632_020

Information

Type -
Description -
Location Contig172632: 2609-5448
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_020 0.0 - - -
2 Hb_002367_120 0.1395239696 - - -
3 Hb_057217_010 0.1467346898 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
4 Hb_000407_060 0.1852662681 - - -
5 Hb_004361_030 0.1951687642 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
6 Hb_001218_080 0.2120882659 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_150998_010 0.2190693289 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_006216_010 0.2217931843 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
9 Hb_126907_010 0.2246242391 - - -
10 Hb_046117_040 0.2289043512 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
11 Hb_000117_170 0.2353012088 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
12 Hb_000281_170 0.236760838 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_084611_010 0.2461966551 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
14 Hb_002774_130 0.2595260705 - - -
15 Hb_000849_110 0.2611991206 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
16 Hb_000270_850 0.2722212326 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000862_020 0.2734213324 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
18 Hb_027337_070 0.276356484 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
19 Hb_029393_020 0.2790688031 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
20 Hb_007194_020 0.2922177376 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]

Gene co-expression network

sample Hb_172632_020 Hb_172632_020 Hb_002367_120 Hb_002367_120 Hb_172632_020--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_172632_020--Hb_057217_010 Hb_000407_060 Hb_000407_060 Hb_172632_020--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_172632_020--Hb_004361_030 Hb_001218_080 Hb_001218_080 Hb_172632_020--Hb_001218_080 Hb_150998_010 Hb_150998_010 Hb_172632_020--Hb_150998_010 Hb_002367_120--Hb_000407_060 Hb_000175_550 Hb_000175_550 Hb_002367_120--Hb_000175_550 Hb_002367_120--Hb_057217_010 Hb_147996_010 Hb_147996_010 Hb_002367_120--Hb_147996_010 Hb_029393_020 Hb_029393_020 Hb_002367_120--Hb_029393_020 Hb_057217_010--Hb_004361_030 Hb_057217_010--Hb_001218_080 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_126907_010 Hb_126907_010 Hb_057217_010--Hb_126907_010 Hb_027337_070 Hb_027337_070 Hb_000407_060--Hb_027337_070 Hb_000407_060--Hb_004361_030 Hb_000248_120 Hb_000248_120 Hb_000407_060--Hb_000248_120 Hb_000407_060--Hb_057217_010 Hb_004361_030--Hb_027337_070 Hb_003185_060 Hb_003185_060 Hb_004361_030--Hb_003185_060 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_004361_030--Hb_150998_010 Hb_156850_110 Hb_156850_110 Hb_001218_080--Hb_156850_110 Hb_000684_170 Hb_000684_170 Hb_001218_080--Hb_000684_170 Hb_001501_050 Hb_001501_050 Hb_001218_080--Hb_001501_050 Hb_001218_080--Hb_000270_850 Hb_084611_010 Hb_084611_010 Hb_001218_080--Hb_084611_010 Hb_150998_010--Hb_006216_010 Hb_046117_040 Hb_046117_040 Hb_150998_010--Hb_046117_040 Hb_000862_020 Hb_000862_020 Hb_150998_010--Hb_000862_020 Hb_150998_010--Hb_126907_010 Hb_007194_020 Hb_007194_020 Hb_150998_010--Hb_007194_020 Hb_000281_170 Hb_000281_170 Hb_150998_010--Hb_000281_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0652906 0.0104669 0 0 0.0264769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0201294 0

CAGE analysis