Hb_000175_550

Information

Type -
Description -
Location Contig175: 385653-387063
Sequence    

Annotation

kegg
ID rcu:RCOM_1383570
description Dehydration-responsive protein RD22 precursor, putative
nr
ID XP_002522129.1
description Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
swissprot
ID Q08298
description Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1
trembl
ID B9S813
description Dehydration-responsive protein RD22, putative OS=Ricinus communis GN=RCOM_1383570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_550 0.0 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
2 Hb_176121_010 0.1732455603 - - -
3 Hb_003658_030 0.1931687226 - - -
4 Hb_000701_070 0.2051145578 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_002367_120 0.2258659987 - - -
6 Hb_005214_020 0.231509389 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
7 Hb_104498_030 0.2434565933 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
8 Hb_000248_120 0.2615253131 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
9 Hb_000407_060 0.2615966577 - - -
10 Hb_009164_020 0.2938085461 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
11 Hb_003238_010 0.3003329726 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
12 Hb_123304_010 0.3086991033 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
13 Hb_003780_040 0.3155118185 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_172632_020 0.316433479 - - -
15 Hb_000893_030 0.31802513 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
16 Hb_088176_010 0.3235719664 - - -
17 Hb_004800_210 0.3299772402 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
18 Hb_007188_060 0.3310720148 - - -
19 Hb_147996_010 0.3353456919 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
20 Hb_002897_020 0.3412143397 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_000175_550 Hb_000175_550 Hb_176121_010 Hb_176121_010 Hb_000175_550--Hb_176121_010 Hb_003658_030 Hb_003658_030 Hb_000175_550--Hb_003658_030 Hb_000701_070 Hb_000701_070 Hb_000175_550--Hb_000701_070 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_005214_020 Hb_005214_020 Hb_000175_550--Hb_005214_020 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_176121_010--Hb_003658_030 Hb_176121_010--Hb_005214_020 Hb_176121_010--Hb_000701_070 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_003658_030--Hb_000701_070 Hb_003658_030--Hb_005214_020 Hb_001623_440 Hb_001623_440 Hb_003658_030--Hb_001623_440 Hb_123304_010 Hb_123304_010 Hb_003658_030--Hb_123304_010 Hb_000701_070--Hb_123304_010 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_000701_070--Hb_005214_020 Hb_000407_060 Hb_000407_060 Hb_002367_120--Hb_000407_060 Hb_172632_020 Hb_172632_020 Hb_002367_120--Hb_172632_020 Hb_057217_010 Hb_057217_010 Hb_002367_120--Hb_057217_010 Hb_147996_010 Hb_147996_010 Hb_002367_120--Hb_147996_010 Hb_029393_020 Hb_029393_020 Hb_002367_120--Hb_029393_020 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_005214_020--Hb_001623_440 Hb_011505_010 Hb_011505_010 Hb_104498_030--Hb_011505_010 Hb_104498_030--Hb_176121_010 Hb_104498_030--Hb_000701_070 Hb_006925_090 Hb_006925_090 Hb_104498_030--Hb_006925_090 Hb_104498_030--Hb_003658_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.400172 0.382407 0 0 0.215115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0515453 0

CAGE analysis