Hb_104498_030

Information

Type -
Description -
Location Contig104498: 11632-24800
Sequence    

Annotation

kegg
ID rcu:RCOM_0618970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID KDP34542.1
description hypothetical protein JCGZ_11092 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067KEI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11092 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104498_030 0.0 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
2 Hb_000175_550 0.2434565933 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_011505_010 0.2849594419 - - -
4 Hb_176121_010 0.2963085588 - - -
5 Hb_000701_070 0.3073648876 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006925_090 0.3121486623 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
7 Hb_003658_030 0.3157002512 - - -
8 Hb_000260_150 0.321710058 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_000375_230 0.3343777821 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_000540_090 0.3344192813 - - PREDICTED: chitinase 2-like [Jatropha curcas]
11 Hb_003938_030 0.3368947214 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
12 Hb_004800_210 0.3382027906 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
13 Hb_147996_010 0.3389651344 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
14 Hb_009164_020 0.3403871067 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
15 Hb_000164_090 0.3440074055 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
16 Hb_002367_120 0.3440682628 - - -
17 Hb_000248_120 0.3520966208 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
18 Hb_005679_080 0.3532533946 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
19 Hb_005214_020 0.3539928866 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
20 Hb_015175_010 0.3615173665 - - hypothetical protein JCGZ_17977 [Jatropha curcas]

Gene co-expression network

sample Hb_104498_030 Hb_104498_030 Hb_000175_550 Hb_000175_550 Hb_104498_030--Hb_000175_550 Hb_011505_010 Hb_011505_010 Hb_104498_030--Hb_011505_010 Hb_176121_010 Hb_176121_010 Hb_104498_030--Hb_176121_010 Hb_000701_070 Hb_000701_070 Hb_104498_030--Hb_000701_070 Hb_006925_090 Hb_006925_090 Hb_104498_030--Hb_006925_090 Hb_003658_030 Hb_003658_030 Hb_104498_030--Hb_003658_030 Hb_000175_550--Hb_176121_010 Hb_000175_550--Hb_003658_030 Hb_000175_550--Hb_000701_070 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_005214_020 Hb_005214_020 Hb_000175_550--Hb_005214_020 Hb_011505_010--Hb_006925_090 Hb_000260_150 Hb_000260_150 Hb_011505_010--Hb_000260_150 Hb_001195_430 Hb_001195_430 Hb_011505_010--Hb_001195_430 Hb_000392_460 Hb_000392_460 Hb_011505_010--Hb_000392_460 Hb_011174_030 Hb_011174_030 Hb_011505_010--Hb_011174_030 Hb_176121_010--Hb_003658_030 Hb_176121_010--Hb_005214_020 Hb_176121_010--Hb_000701_070 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_000701_070--Hb_003658_030 Hb_123304_010 Hb_123304_010 Hb_000701_070--Hb_123304_010 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_000701_070--Hb_005214_020 Hb_006925_090--Hb_000260_150 Hb_026527_040 Hb_026527_040 Hb_006925_090--Hb_026527_040 Hb_171062_010 Hb_171062_010 Hb_006925_090--Hb_171062_010 Hb_002284_110 Hb_002284_110 Hb_006925_090--Hb_002284_110 Hb_003658_030--Hb_005214_020 Hb_001623_440 Hb_001623_440 Hb_003658_030--Hb_001623_440 Hb_003658_030--Hb_123304_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0431776 0.0510848 0 0 0.0221549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0150886 0 0.00599518 0

CAGE analysis