Hb_001623_440

Information

Type -
Description -
Location Contig1623: 340422-342029
Sequence    

Annotation

kegg
ID tcc:TCM_044844
description Leucine-rich repeat receptor-like protein kinase family protein, putative
nr
ID KDP33359.1
description hypothetical protein JCGZ_12908 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KNH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12908 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_440 0.0 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
2 Hb_057486_010 0.1411225431 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
3 Hb_003658_030 0.2508535891 - - -
4 Hb_027337_070 0.2643134395 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
5 Hb_001032_040 0.2674794303 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
6 Hb_005214_020 0.2827031956 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
7 Hb_012150_050 0.3063861822 - - protein binding protein, putative [Ricinus communis]
8 Hb_000248_120 0.3072058786 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
9 Hb_043950_010 0.3080500001 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
10 Hb_007545_160 0.311616232 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
11 Hb_000701_070 0.3123042767 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004410_060 0.318526897 - - -
13 Hb_004650_090 0.3222671157 - - -
14 Hb_124976_010 0.3239149427 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_000833_080 0.3244677811 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
16 Hb_019859_030 0.3260479289 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
17 Hb_007139_010 0.3261372015 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
18 Hb_043999_010 0.326263911 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
19 Hb_007765_090 0.3262686099 - - unknown [Glycine max]
20 Hb_012815_020 0.3263642254 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_001623_440 Hb_001623_440 Hb_057486_010 Hb_057486_010 Hb_001623_440--Hb_057486_010 Hb_003658_030 Hb_003658_030 Hb_001623_440--Hb_003658_030 Hb_027337_070 Hb_027337_070 Hb_001623_440--Hb_027337_070 Hb_001032_040 Hb_001032_040 Hb_001623_440--Hb_001032_040 Hb_005214_020 Hb_005214_020 Hb_001623_440--Hb_005214_020 Hb_012150_050 Hb_012150_050 Hb_001623_440--Hb_012150_050 Hb_057486_010--Hb_012150_050 Hb_000833_080 Hb_000833_080 Hb_057486_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_057486_010--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_057486_010--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_057486_010--Hb_173423_010 Hb_000701_070 Hb_000701_070 Hb_003658_030--Hb_000701_070 Hb_003658_030--Hb_005214_020 Hb_176121_010 Hb_176121_010 Hb_003658_030--Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_003658_030--Hb_000175_550 Hb_123304_010 Hb_123304_010 Hb_003658_030--Hb_123304_010 Hb_004361_030 Hb_004361_030 Hb_027337_070--Hb_004361_030 Hb_000407_060 Hb_000407_060 Hb_027337_070--Hb_000407_060 Hb_003185_060 Hb_003185_060 Hb_027337_070--Hb_003185_060 Hb_002003_110 Hb_002003_110 Hb_027337_070--Hb_002003_110 Hb_000580_040 Hb_000580_040 Hb_027337_070--Hb_000580_040 Hb_045527_010 Hb_045527_010 Hb_027337_070--Hb_045527_010 Hb_000705_310 Hb_000705_310 Hb_001032_040--Hb_000705_310 Hb_001631_120 Hb_001631_120 Hb_001032_040--Hb_001631_120 Hb_000105_090 Hb_000105_090 Hb_001032_040--Hb_000105_090 Hb_002805_080 Hb_002805_080 Hb_001032_040--Hb_002805_080 Hb_003384_050 Hb_003384_050 Hb_001032_040--Hb_003384_050 Hb_000089_230 Hb_000089_230 Hb_001032_040--Hb_000089_230 Hb_005214_020--Hb_176121_010 Hb_005214_020--Hb_000175_550 Hb_005214_020--Hb_000701_070 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_187459_010 Hb_187459_010 Hb_012150_050--Hb_187459_010 Hb_002204_040 Hb_002204_040 Hb_012150_050--Hb_002204_040 Hb_001762_070 Hb_001762_070 Hb_012150_050--Hb_001762_070 Hb_000589_320 Hb_000589_320 Hb_012150_050--Hb_000589_320 Hb_012150_050--Hb_000696_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0187943 0.0168872 0 0 0.0595808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis