Hb_001032_040

Information

Type -
Description -
Location Contig1032: 44543-46084
Sequence    

Annotation

kegg
ID rcu:RCOM_0190110
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative
nr
ID XP_012072933.1
description PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
swissprot
ID P82538
description PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1
trembl
ID A0A067KYP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08401 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001032_040 0.0 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
2 Hb_000705_310 0.1713894757 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
3 Hb_001631_120 0.1714231134 - - unnamed protein product [Vitis vinifera]
4 Hb_000105_090 0.1714727027 - - -
5 Hb_002805_080 0.1715573663 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
6 Hb_003384_050 0.1719686673 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000089_230 0.1720655967 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
8 Hb_000290_010 0.1740727195 - - -
9 Hb_002307_060 0.1746159414 - - -
10 Hb_011781_050 0.1776222966 - - -
11 Hb_004021_110 0.1813082884 - - -
12 Hb_003494_250 0.1918032432 - - -
13 Hb_001217_030 0.2136973341 - - -
14 Hb_005357_190 0.2142038739 - - Protein COBRA precursor, putative [Ricinus communis]
15 Hb_001486_110 0.2176959622 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
16 Hb_003462_130 0.2268699871 - - -
17 Hb_003053_040 0.2382143286 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_131621_010 0.2498004517 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
19 Hb_123304_010 0.2566595116 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
20 Hb_001623_440 0.2674794303 - - hypothetical protein JCGZ_12908 [Jatropha curcas]

Gene co-expression network

sample Hb_001032_040 Hb_001032_040 Hb_000705_310 Hb_000705_310 Hb_001032_040--Hb_000705_310 Hb_001631_120 Hb_001631_120 Hb_001032_040--Hb_001631_120 Hb_000105_090 Hb_000105_090 Hb_001032_040--Hb_000105_090 Hb_002805_080 Hb_002805_080 Hb_001032_040--Hb_002805_080 Hb_003384_050 Hb_003384_050 Hb_001032_040--Hb_003384_050 Hb_000089_230 Hb_000089_230 Hb_001032_040--Hb_000089_230 Hb_000705_310--Hb_001631_120 Hb_000705_310--Hb_000105_090 Hb_000705_310--Hb_002805_080 Hb_000705_310--Hb_003384_050 Hb_000705_310--Hb_000089_230 Hb_000290_010 Hb_000290_010 Hb_000705_310--Hb_000290_010 Hb_001631_120--Hb_000105_090 Hb_001631_120--Hb_002805_080 Hb_001631_120--Hb_003384_050 Hb_001631_120--Hb_000089_230 Hb_001631_120--Hb_000290_010 Hb_000105_090--Hb_002805_080 Hb_000105_090--Hb_003384_050 Hb_000105_090--Hb_000089_230 Hb_000105_090--Hb_000290_010 Hb_002805_080--Hb_003384_050 Hb_002805_080--Hb_000089_230 Hb_002805_080--Hb_000290_010 Hb_003384_050--Hb_000089_230 Hb_003384_050--Hb_000290_010 Hb_000089_230--Hb_000290_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0661526 0.491856 0 0 0.593144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis