Hb_187459_010

Information

Type -
Description -
Location Contig187459: 744-970
Sequence    

Annotation

kegg
ID cit:102619199
description uncharacterized LOC102619199
nr
ID XP_006495334.1
description PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DSZ1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0066641mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187459_010 0.0 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
2 Hb_012150_050 0.1990130728 - - protein binding protein, putative [Ricinus communis]
3 Hb_032531_040 0.2089232008 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
4 Hb_001579_040 0.2164521133 - - -
5 Hb_059952_010 0.2207918923 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
6 Hb_001454_110 0.2225008576 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_001907_090 0.2253612527 - - -
8 Hb_000805_300 0.235420287 - - -
9 Hb_004958_040 0.2524568797 - - -
10 Hb_005222_010 0.2540235616 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
11 Hb_003849_090 0.2640898391 - - -
12 Hb_000589_320 0.2682079004 - - unnamed protein product [Vitis vinifera]
13 Hb_032531_050 0.2698823773 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
14 Hb_002204_040 0.2701836261 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
15 Hb_122567_020 0.2708197636 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
16 Hb_000684_480 0.2740971266 transcription factor TF Family: Orphans -
17 Hb_000316_090 0.2759827469 - - -
18 Hb_000696_320 0.278825217 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
19 Hb_005016_070 0.2796473053 - - -
20 Hb_000906_050 0.2800310496 - - -

Gene co-expression network

sample Hb_187459_010 Hb_187459_010 Hb_012150_050 Hb_012150_050 Hb_187459_010--Hb_012150_050 Hb_032531_040 Hb_032531_040 Hb_187459_010--Hb_032531_040 Hb_001579_040 Hb_001579_040 Hb_187459_010--Hb_001579_040 Hb_059952_010 Hb_059952_010 Hb_187459_010--Hb_059952_010 Hb_001454_110 Hb_001454_110 Hb_187459_010--Hb_001454_110 Hb_001907_090 Hb_001907_090 Hb_187459_010--Hb_001907_090 Hb_057486_010 Hb_057486_010 Hb_012150_050--Hb_057486_010 Hb_002204_040 Hb_002204_040 Hb_012150_050--Hb_002204_040 Hb_001762_070 Hb_001762_070 Hb_012150_050--Hb_001762_070 Hb_000589_320 Hb_000589_320 Hb_012150_050--Hb_000589_320 Hb_000696_320 Hb_000696_320 Hb_012150_050--Hb_000696_320 Hb_032531_040--Hb_001454_110 Hb_032531_050 Hb_032531_050 Hb_032531_040--Hb_032531_050 Hb_000805_300 Hb_000805_300 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_032531_040--Hb_000589_320 Hb_032531_040--Hb_001579_040 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_001454_110 Hb_001579_040--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_001579_040--Hb_000316_090 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010 Hb_122567_020 Hb_122567_020 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_005933_010 Hb_005933_010 Hb_059952_010--Hb_005933_010 Hb_059952_010--Hb_000805_300 Hb_059952_010--Hb_001454_110 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_001454_110--Hb_000805_300 Hb_001454_110--Hb_032531_050 Hb_101151_030 Hb_101151_030 Hb_001454_110--Hb_101151_030 Hb_001907_090--Hb_004958_040 Hb_000684_480 Hb_000684_480 Hb_001907_090--Hb_000684_480 Hb_001907_090--Hb_122567_020 Hb_000066_180 Hb_000066_180 Hb_001907_090--Hb_000066_180 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1197.43 337.597 1460.23 0 19188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1027.99 319.997 0 0 0

CAGE analysis