Hb_057486_010

Information

Type -
Description -
Location Contig57486: 14-854
Sequence    

Annotation

kegg
ID tcc:TCM_036595
description hypothetical protein
nr
ID XP_012477608.1
description PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FJB0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_036595 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057486_010 0.0 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
2 Hb_001623_440 0.1411225431 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
3 Hb_012150_050 0.2192437595 - - protein binding protein, putative [Ricinus communis]
4 Hb_000833_080 0.2229744301 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
5 Hb_000696_320 0.2249191745 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
6 Hb_043950_010 0.248010048 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
7 Hb_173423_010 0.265105101 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000252_230 0.265154577 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
9 Hb_007545_160 0.2691972652 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_000809_150 0.2715253174 - - -
11 Hb_001105_060 0.2722104259 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
12 Hb_000094_060 0.2725117205 - - -
13 Hb_000580_040 0.2765920338 - - -
14 Hb_001125_020 0.2836970604 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
15 Hb_043999_010 0.2873745822 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
16 Hb_007765_090 0.2881368748 - - unknown [Glycine max]
17 Hb_004410_060 0.2897383681 - - -
18 Hb_004650_090 0.2957194615 - - -
19 Hb_131621_010 0.2989488476 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
20 Hb_124976_010 0.3023688306 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_057486_010 Hb_057486_010 Hb_001623_440 Hb_001623_440 Hb_057486_010--Hb_001623_440 Hb_012150_050 Hb_012150_050 Hb_057486_010--Hb_012150_050 Hb_000833_080 Hb_000833_080 Hb_057486_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_057486_010--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_057486_010--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_057486_010--Hb_173423_010 Hb_003658_030 Hb_003658_030 Hb_001623_440--Hb_003658_030 Hb_027337_070 Hb_027337_070 Hb_001623_440--Hb_027337_070 Hb_001032_040 Hb_001032_040 Hb_001623_440--Hb_001032_040 Hb_005214_020 Hb_005214_020 Hb_001623_440--Hb_005214_020 Hb_001623_440--Hb_012150_050 Hb_187459_010 Hb_187459_010 Hb_012150_050--Hb_187459_010 Hb_002204_040 Hb_002204_040 Hb_012150_050--Hb_002204_040 Hb_001762_070 Hb_001762_070 Hb_012150_050--Hb_001762_070 Hb_000589_320 Hb_000589_320 Hb_012150_050--Hb_000589_320 Hb_012150_050--Hb_000696_320 Hb_000833_080--Hb_000696_320 Hb_000833_080--Hb_043950_010 Hb_000833_080--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000833_080--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000833_080--Hb_000580_040 Hb_001125_020 Hb_001125_020 Hb_000833_080--Hb_001125_020 Hb_000696_320--Hb_043950_010 Hb_000696_320--Hb_001125_020 Hb_000696_320--Hb_173423_010 Hb_000696_320--Hb_007545_160 Hb_000696_320--Hb_000580_040 Hb_043950_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_043950_010--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_043950_010--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_173423_010--Hb_000580_040 Hb_173423_010--Hb_043950_010 Hb_173423_010--Hb_007545_160 Hb_173423_010--Hb_004410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0300201 0.0223852 0 0 0.180912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis