Hb_001125_020

Information

Type -
Description -
Location Contig1125: 34680-40417
Sequence    

Annotation

kegg
ID tcc:TCM_002226
description F-box and associated interaction domains-containing protein, putative
nr
ID KJB10731.1
description hypothetical protein B456_001G219500 [Gossypium raimondii]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID A0A0D2Q2L5
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G219500 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at3g07870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001125_020 0.0 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
2 Hb_001385_050 0.0924957822 - - catalytic, putative [Ricinus communis]
3 Hb_000116_080 0.1476442189 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
4 Hb_000696_320 0.1569988979 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
5 Hb_001206_070 0.1643709274 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000833_080 0.1790578447 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
7 Hb_000005_210 0.1800142458 - - -
8 Hb_000041_170 0.1800142458 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
9 Hb_000047_040 0.1800142458 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
10 Hb_000072_260 0.1800142458 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
11 Hb_000081_170 0.1800142458 - - -
12 Hb_000088_250 0.1800142458 - - -
13 Hb_000110_220 0.1800142458 - - -
14 Hb_000110_360 0.1800142458 - - -
15 Hb_000111_510 0.1800142458 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000122_170 0.1800142458 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
17 Hb_000122_180 0.1800142458 - - -
18 Hb_000130_150 0.1800142458 - - -
19 Hb_000139_020 0.1800142458 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000140_180 0.1800142458 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_001125_020 Hb_001125_020 Hb_001385_050 Hb_001385_050 Hb_001125_020--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_001125_020--Hb_000116_080 Hb_000696_320 Hb_000696_320 Hb_001125_020--Hb_000696_320 Hb_001206_070 Hb_001206_070 Hb_001125_020--Hb_001206_070 Hb_000833_080 Hb_000833_080 Hb_001125_020--Hb_000833_080 Hb_000005_210 Hb_000005_210 Hb_001125_020--Hb_000005_210 Hb_001385_050--Hb_001206_070 Hb_022593_060 Hb_022593_060 Hb_001385_050--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001385_050--Hb_010024_010 Hb_001385_050--Hb_000116_080 Hb_001241_060 Hb_001241_060 Hb_001385_050--Hb_001241_060 Hb_000116_080--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_000116_080--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_000116_080--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_000116_080--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_000116_080--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000116_080--Hb_000088_250 Hb_000696_320--Hb_000833_080 Hb_043950_010 Hb_043950_010 Hb_000696_320--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_000696_320--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000696_320--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000696_320--Hb_000580_040 Hb_001206_070--Hb_022593_060 Hb_001206_070--Hb_010024_010 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001241_060 Hb_000833_080--Hb_043950_010 Hb_000833_080--Hb_173423_010 Hb_000833_080--Hb_007545_160 Hb_000833_080--Hb_000580_040 Hb_000005_210--Hb_000041_170 Hb_000005_210--Hb_000047_040 Hb_000005_210--Hb_000072_260 Hb_000005_210--Hb_000081_170 Hb_000005_210--Hb_000088_250 Hb_000110_220 Hb_000110_220 Hb_000005_210--Hb_000110_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232692 0.046732 0 0 0 1.03557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis