Hb_000696_320

Information

Type -
Description -
Location Contig696: 221422-223373
Sequence    

Annotation

kegg
ID bvg:104884717
description uncharacterized LOC104884717
nr
ID XP_010667704.1
description PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID O81630
description F8M12.22 protein OS=Arabidopsis thaliana GN=F8M12.22 PE=4 SV=1
Gene Ontology
ID GO:0003676
description reverse trancriptase (pfam: score: )

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_320 0.0 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
2 Hb_000833_080 0.0289926829 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
3 Hb_043950_010 0.1414912296 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
4 Hb_001125_020 0.1569988979 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
5 Hb_173423_010 0.1575777528 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007545_160 0.1846856591 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
7 Hb_000580_040 0.1906905774 - - -
8 Hb_004410_060 0.2196218314 - - -
9 Hb_057486_010 0.2249191745 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
10 Hb_001385_050 0.235003207 - - catalytic, putative [Ricinus communis]
11 Hb_124976_010 0.2392479103 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_000094_060 0.2428199657 - - -
13 Hb_019859_030 0.2461243004 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
14 Hb_007139_010 0.2464036247 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
15 Hb_012815_020 0.247111105 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_000005_210 0.2486866534 - - -
17 Hb_000041_170 0.2486866534 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
18 Hb_000047_040 0.2486866534 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
19 Hb_000072_260 0.2486866534 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
20 Hb_000081_170 0.2486866534 - - -

Gene co-expression network

sample Hb_000696_320 Hb_000696_320 Hb_000833_080 Hb_000833_080 Hb_000696_320--Hb_000833_080 Hb_043950_010 Hb_043950_010 Hb_000696_320--Hb_043950_010 Hb_001125_020 Hb_001125_020 Hb_000696_320--Hb_001125_020 Hb_173423_010 Hb_173423_010 Hb_000696_320--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000696_320--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000696_320--Hb_000580_040 Hb_000833_080--Hb_043950_010 Hb_000833_080--Hb_173423_010 Hb_000833_080--Hb_007545_160 Hb_000833_080--Hb_000580_040 Hb_000833_080--Hb_001125_020 Hb_043950_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_043950_010--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_043950_010--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_001385_050 Hb_001385_050 Hb_001125_020--Hb_001385_050 Hb_000116_080 Hb_000116_080 Hb_001125_020--Hb_000116_080 Hb_001206_070 Hb_001206_070 Hb_001125_020--Hb_001206_070 Hb_000005_210 Hb_000005_210 Hb_001125_020--Hb_000005_210 Hb_173423_010--Hb_000580_040 Hb_173423_010--Hb_043950_010 Hb_173423_010--Hb_007545_160 Hb_173423_010--Hb_004410_060 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007545_160--Hb_007139_010 Hb_007545_160--Hb_012815_020 Hb_000580_040--Hb_043950_010 Hb_000580_040--Hb_007545_160 Hb_000580_040--Hb_004410_060 Hb_000580_040--Hb_124976_010 Hb_000580_040--Hb_019859_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.081495 0 0 0 0.607274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis